Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq46 150 2e-31 seq116 118 1e-21 >seq46 Length=146035 Score = 150 bits (166), Expect = 2e-31 Identities = 383/580 (66%), Gaps = 6/580 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||| ||||||||||| | | ||| | || || ||||| || || Sbjct 141797 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATCAGCTCATTGGAAAAAGTCAGG 141856 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || |||||||| | ||| || ||||| || || | ||||| |||||| Sbjct 141857 CCAGGCATGAGACCACGCTTGCGCAACCAGAAGATGGAGGCAAAGGCACCGGAGAAGAAG 141916 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGT 33758 || || || || || ||||| |||| || | || || | || | |||| Sbjct 141917 ATACCCTCGACGGCCGCAAAAGCAACGAGGCGCTGAGCAAAGGTGGATTCCTTGTCGGCA 141976 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||||||| | |||||||||||||| | || || || || || ||||| ||| Sbjct 141977 ATCCACTTCAGGGCCCAATCGGCCTTGCGGCGAATGCAGGGAATGGTGTCAATGGCGTTA 142036 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 |||||||| | | || || | |||||||| |||| || || | Sbjct 142037 AAGAGATAAGTGCGCTGGGCGGGCTCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGTC 142096 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 || || |||||||| || || ||||| || |||||||| || | |||||||| || | Sbjct 142097 TCAGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAACC 142156 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || || || | |||| || || | | || || ||||| || |||||| || ||| Sbjct 142157 TGAACCTCAGCGGAAAAGCGCTCAACAAGGTTCTCGTTCACAATGCCATCAGAAGCAGCA 142216 Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGT--GTTAGTTTATTCCAA 34055 || || || | | || ||||| | | || | || || | | || ||||| Sbjct 142217 AAGAAAGCGAGAATGTGAGAGATAAAGAACTGCTCATCCTTGTTCATGCGGTTGTTCCAG 142276 Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 || | | ||| ||||| | ||| | || || | ||||| || || ||||| ||||| Sbjct 142277 TCGTGAAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAACGAAGCCTCGGCCTTC 142336 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAA 34155 || ||||| | ||| || ||||| || | ||| ||||||| Sbjct 142337 TTGTACATCTGCCAAATCTCATGGTACTTGATGGGGAAAA 142376 >seq116 Length=85249 Score = 118 bits (130), Expect = 1e-21 Identities = 387/597 (65%), Gaps = 16/597 (3%) Strand=Plus/Minus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||||| | ||| || || | | || | || ||||| || Sbjct 68921 AGGGCACTCGTTGGGGCACATCAGAGTCCAGTCACCATTCTTCTCAATACGCTTCATGAA 68862 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 |||||||| ||||| ||||| | || ||||| | | | | ||||| || || Sbjct 68861 CAGATCAGGGATCCACAGAGCAAGGAACAGATCACGGGCGCGAACCTCCTCCTTGCCGTG 68802 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 |||||| |||||||||||| | | | || | |||||| || || | || || || Sbjct 68801 ATTCTTGCGGAGATCGAGGAACTCAAATACGTCTGCATGCCAAGGCTCAAGATAAATAGC 68742 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | | || || || ||||| || ||||| || | || | || ||||| || | || Sbjct 68741 AAAAGCACCGGGACGCTTGTTGCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAGAC 68682 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | | ||| |||| |||||||| || |||| |||||||| | ||| || || | Sbjct 68681 ACGGAGCATGGGAACGATACCGTTAGAAGTACCGTTGGTACCAGCGATGTAAGAGCCGGT 68622 Query 63521 GGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 ||||| ||| || ||| || || || || || ||||| || || || | || Sbjct 68621 AGCACGGATACGGTGAACGTTG--AGGCCAATACCACCCGCCATCTTGGAAATCATAGCA 68564 Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 || || || || |||||||| || || ||||| ||||| |||||| || || || Sbjct 68563 CAAGTCTTCAAGGTATCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAG 68504 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 || ||| | || | | ||| || ||||| || | || || || || || || Sbjct 68503 CACGAAGAGAGCTGCGCCTGGGGAGTACCAGCATTGAACAGAGTGGGGGATGCATGAGTG 68444 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA----GCT-GAGTCTAT-ATCCCAT 63752 || | || ||| | || ||||| ||||| | | ||| || | | | |||| Sbjct 68443 AAGAACTTGCTAGACATGAGGTTGTAAGTCTCCAGAACACGCTCGACATTGTCACCCCA- 68385 Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTG 63809 || || || || |||||||| | ||||||||| || | |||||||| ||| Sbjct 68384 -----AACGCCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCAACAATCTTG 68333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629812529968320