Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq46 168 1e-36 seq116 145 1e-29 >seq46 Length=146035 Score = 168 bits (186), Expect = 1e-36 Identities = 386/580 (67%), Gaps = 6/580 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||| ||||||||||| | | ||| || || |||||||| || || Sbjct 141797 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATCAGCTCATTGGAAAAAGTCAGG 141856 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| || |||||||| | ||| || ||||| ||||| | || || |||||| Sbjct 141857 CCAGGCATGAGACCACGCTTGCGCAACCAGAAGATGGAGGCAAAGGCACCGGAGAAGAAG 141916 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGT 50136 || || || || || ||||| ||||| || | || || | ||| | |||| Sbjct 141917 ATACCCTCGACGGCCGCAAAAGCAACGAGGCGCTGAGCAAAGGTGGATTCCTTGTCGGCA 141976 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 |||||||| | |||||||||||||| | || || || || || ||||| ||| Sbjct 141977 ATCCACTTCAGGGCCCAATCGGCCTTGCGGCGAATGCAGGGAATGGTGTCAATGGCGTTA 142036 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 |||||||| | | || || | |||||||| |||| || || | Sbjct 142037 AAGAGATAAGTGCGCTGGGCGGGCTCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGTC 142096 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || |||||||| || || ||||| || |||||||| || | |||||||| || | Sbjct 142097 TCAGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAACC 142156 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || || || | |||| || ||| | | || || ||||| || || ||| || ||| Sbjct 142157 TGAACCTCAGCGGAAAAGCGCTCAACAAGGTTCTCGTTCACAATGCCATCAGAAGCAGCA 142216 Query 50377 AAAAACGCCAATACATGTTTTATA---AAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA 50433 || || || | | || ||| || || | || ||| | | || ||||| Sbjct 142217 AAGAAAGCGAGAATGTGAGAGATAAAGAACTGCTCATCCTTGTTCATGCGGTTGTTCCAG 142276 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 || | | ||| ||||| | ||| | || || | ||||| || || ||||| ||||| Sbjct 142277 TCGTGAAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAACGAAGCCTCGGCCTTC 142336 Query 50494 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAA 50533 || ||||| | ||| || ||||| || | ||| ||||||| Sbjct 142337 TTGTACATCTGCCAAATCTCATGGTACTTGATGGGGAAAA 142376 >seq116 Length=85249 Score = 145 bits (160), Expect = 1e-29 Identities = 397/603 (66%), Gaps = 24/603 (4%) Strand=Plus/Minus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 ||||| || |||| || ||||||| | ||| || |||| | || | || ||||| Sbjct 68923 CCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTCACCATTCTTCTCAATACGCTTCATG 68864 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 || |||||||| ||||| ||||| | || ||||| | || | | |||||| || || Sbjct 68863 AACAGATCAGGGATCCACAGAGCAAGGAACAGATCACGGGCGCGAACCTCCTCCTTGCCG 68804 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 |||||| |||||||||||| | | | || | |||||| || || | || || Sbjct 68803 TGATTCTTGCGGAGATCGAGGAACTCAAATACGTCTGCATGCCAAGGCTCAAGATAAATA 68744 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | | || || || ||||| || ||||| || | || | || ||||| || | Sbjct 68743 GCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAG 68684 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 || | | ||| |||| ||||| || || ||||| ||||| || | ||| || || Sbjct 68683 ACACGGAGCATGGGAACGATACCGTTAGAAGTACCGTTGGTACCAGCGATGTAAGAGCCG 68624 Query 80191 CTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248 | ||||| ||| || ||| || || || || || ||||| || || || | | Sbjct 68623 GTAGCACGGATACGGTGAACGTTG--AGGCCAATACCACCCGCCATCTTGGAAATCATAG 68566 Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308 | || || || ||||||||||| ||||| ||||| ||||| |||||| || || | Sbjct 68565 CACAAGTCTTCAAGGTATCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGA 68506 Query 80309 AACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCG 80364 | || ||| | || || || ||| || ||||| || | || || || || Sbjct 68505 AGCACGAAGAGAGCTG----CGCCTGGGGAGTACCAGCATTGAACAGAGTGGGGGATGCA 68450 Query 80365 TGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATA----GCT-GATTCTAT-A 80418 || || || | || ||||| || ||||| ||||| | | ||| || | | | Sbjct 68449 TGAGTGAAGAACTTGCTAGACATGAGGTTGTAAGTCTCCAGAACACGCTCGACATTGTCA 68390 Query 80419 TCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 80478 |||| || || || || |||||||| | ||||||||| || | ||||| ||| Sbjct 68389 CCCCA------AACGCCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCAACAATC 68336 Query 80479 TTG 80481 ||| Sbjct 68335 TTG 68333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718263017936160