Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq46 149 8e-31
seq116 134 2e-26
>seq46
Length=146035
Score = 149 bits (164), Expect = 8e-31
Identities = 383/581 (66%), Gaps = 8/581 (1%)
Strand=Plus/Plus
Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124
|| || || ||| ||| |||||||| || | | ||| | || |||||||| || ||
Sbjct 141797 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATCAGCTCATTGGAAAAAGTCAGG 141856
Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184
|| ||||| || |||||||| | ||| || || || ||||| | || || ||||||
Sbjct 141857 CCAGGCATGAGACCACGCTTGCGCAACCAGAAGATGGAGGCAAAGGCACCGGAGAAGAAG 141916
Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGT 42241
|| || || || |||||||| |||| || | || || | || | ||||
Sbjct 141917 ATACCCTCGACGGCCGCAAAAGCAACGAGGCGCTGAGCAAAGGTGGATTCCTTGTCGGCA 141976
Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301
|||||||| | |||||||||||||| | || || || || || ||||| |||
Sbjct 141977 ATCCACTTCAGGGCCCAATCGGCCTTGCGGCGAATGCAGGGAATGGTGTCAATGGCGTTA 142036
Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361
|||||||| | | || || | || ||||| |||| || || |
Sbjct 142037 AAGAGATAAGTGCGCTGGGCGGGCTCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGTC 142096
Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421
|| || |||||||| || || ||||| || |||||||| || | ||||||| ||||
Sbjct 142097 TCAGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAACC 142156
Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481
|| || || | |||| || ||| | | || |||||||| || || ||| || |||
Sbjct 142157 TGAACCTCAGCGGAAAAGCGCTCAACAAGGTTCTCGTTCACAATGCCATCAGAAGCAGCA 142216
Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT----TTATTCCA 42537
|| || || | | || ||||| | | || ||| |||| || || |||||
Sbjct 142217 AAGAAAGCGAGAATGTGAGAGATAAAGAACTGCTCATCC-TTGTTCATGCGGTTGTTCCA 142275
Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597
|| | | ||| ||||| | ||| | || || | ||||| || || || || |||||
Sbjct 142276 GTCGTGAAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAACGAAGCCTCGGCCTT 142335
Query 42598 TTTATACATATTCCAGATATCATGATATTGAATTGGGAAAA 42638
|| ||||| | ||| || ||||| || | || |||||||
Sbjct 142336 CTTGTACATCTGCCAAATCTCATGGTACTTGATGGGGAAAA 142376
>seq116
Length=85249
Score = 134 bits (148), Expect = 2e-26
Identities = 342/518 (66%), Gaps = 12/518 (2%)
Strand=Plus/Minus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
||||| || || || || ||||||| | ||| || |||| | | | || |||||
Sbjct 68923 CCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTCACCATTCTTCTCAATACGCTTCATG 68864
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
|| |||||||| ||||| ||||| | || ||||| | || | | |||||| || ||
Sbjct 68863 AACAGATCAGGGATCCACAGAGCAAGGAACAGATCACGGGCGCGAACCTCCTCCTTGCCG 68804
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
|||||| |||||||||||| | | | || | |||||| || || | || ||
Sbjct 68803 TGATTCTTGCGGAGATCGAGGAACTCAAATACGTCTGCATGCCAAGGCTCAAGATAAATA 68744
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | | || || || ||||| || ||||| || | || | || ||||| || |
Sbjct 68743 GCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAG 68684
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|| | | ||| |||| ||||| || || | ||| ||||| || | ||| || ||
Sbjct 68683 ACACGGAGCATGGGAACGATACCGTTAGAAGTACCGTTGGTACCAGCGATGTAAGAGCCG 68624
Query 72274 CTGGCACGAATATTGCTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331
| ||||| ||| | || ||| || || || || || ||||| || || || | |
Sbjct 68623 GTAGCACGGATACGGTGAACGTTG--AGGCCAATACCACCCGCCATCTTGGAAATCATAG 68566
Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391
| || || || ||||||||||| ||||| || || |||||| |||||| || || |
Sbjct 68565 CACAAGTCTTCAAGGTATCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGA 68506
Query 72392 AACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCG 72447
| || ||| | || || || ||| || ||||| || | || || || ||
Sbjct 68505 AGCACGAAGAGAGCTG----CGCCTGGGGAGTACCAGCATTGAACAGAGTGGGGGATGCA 68450
Query 72448 TGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC 72485
|| || || | || ||||| || ||||| |||||
Sbjct 68449 TGAGTGAAGAACTTGCTAGACATGAGGTTGTAAGTCTC 68412
Score = 91.5 bits (100), Expect = 2e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848
|||| ||| | ||||||||||| |||| | || |||| ||||| ||||| ||||||
Sbjct 70117 TCCTGGTCAACAGTAAACTGAATAGGAGCAGCAGCAGCTTGAGTACGGAGATAATACATG 70058
Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908
|| || || ||||| || |||| ||| || ||||| || || | ||| | |
Sbjct 70057 CCGGTCTTAAGACCCAGCTTCCACCCGGTGAAGTGCATGCTGGTAATCTTGCCCATGGTG 69998
Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968
|| || ||||| ||||| | |||||| |||||||||||| || || | || |||
Sbjct 69997 GGGTCCTTCATGTGGATATTAAGGGACTGAGATTGATCGATGAAAGCACCACGATCGGCA 69938
Query 70969 GCCAT 70973
|||||
Sbjct 69937 GCCAT 69933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671133797329440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |