Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq46 149 8e-31 seq116 134 2e-26 >seq46 Length=146035 Score = 149 bits (164), Expect = 8e-31 Identities = 383/581 (66%), Gaps = 8/581 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| ||| |||||||| || | | ||| | || |||||||| || || Sbjct 141797 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATCAGCTCATTGGAAAAAGTCAGG 141856 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||| || |||||||| | ||| || || || ||||| | || || |||||| Sbjct 141857 CCAGGCATGAGACCACGCTTGCGCAACCAGAAGATGGAGGCAAAGGCACCGGAGAAGAAG 141916 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGT 42241 || || || || |||||||| |||| || | || || | || | |||| Sbjct 141917 ATACCCTCGACGGCCGCAAAAGCAACGAGGCGCTGAGCAAAGGTGGATTCCTTGTCGGCA 141976 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||||| | |||||||||||||| | || || || || || ||||| ||| Sbjct 141977 ATCCACTTCAGGGCCCAATCGGCCTTGCGGCGAATGCAGGGAATGGTGTCAATGGCGTTA 142036 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 |||||||| | | || || | || ||||| |||| || || | Sbjct 142037 AAGAGATAAGTGCGCTGGGCGGGCTCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGTC 142096 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || |||||||| || || ||||| || |||||||| || | ||||||| |||| Sbjct 142097 TCAGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAACC 142156 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || || || | |||| || ||| | | || |||||||| || || ||| || ||| Sbjct 142157 TGAACCTCAGCGGAAAAGCGCTCAACAAGGTTCTCGTTCACAATGCCATCAGAAGCAGCA 142216 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT----TTATTCCA 42537 || || || | | || ||||| | | || ||| |||| || || ||||| Sbjct 142217 AAGAAAGCGAGAATGTGAGAGATAAAGAACTGCTCATCC-TTGTTCATGCGGTTGTTCCA 142275 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 || | | ||| ||||| | ||| | || || | ||||| || || || || ||||| Sbjct 142276 GTCGTGAAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAACGAAGCCTCGGCCTT 142335 Query 42598 TTTATACATATTCCAGATATCATGATATTGAATTGGGAAAA 42638 || ||||| | ||| || ||||| || | || ||||||| Sbjct 142336 CTTGTACATCTGCCAAATCTCATGGTACTTGATGGGGAAAA 142376 >seq116 Length=85249 Score = 134 bits (148), Expect = 2e-26 Identities = 342/518 (66%), Gaps = 12/518 (2%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 ||||| || || || || ||||||| | ||| || |||| | | | || ||||| Sbjct 68923 CCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTCACCATTCTTCTCAATACGCTTCATG 68864 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 || |||||||| ||||| ||||| | || ||||| | || | | |||||| || || Sbjct 68863 AACAGATCAGGGATCCACAGAGCAAGGAACAGATCACGGGCGCGAACCTCCTCCTTGCCG 68804 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 |||||| |||||||||||| | | | || | |||||| || || | || || Sbjct 68803 TGATTCTTGCGGAGATCGAGGAACTCAAATACGTCTGCATGCCAAGGCTCAAGATAAATA 68744 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | | || || || ||||| || ||||| || | || | || ||||| || | Sbjct 68743 GCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAG 68684 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| |||| ||||| || || | ||| ||||| || | ||| || || Sbjct 68683 ACACGGAGCATGGGAACGATACCGTTAGAAGTACCGTTGGTACCAGCGATGTAAGAGCCG 68624 Query 72274 CTGGCACGAATATTGCTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 | ||||| ||| | || ||| || || || || || ||||| || || || | | Sbjct 68623 GTAGCACGGATACGGTGAACGTTG--AGGCCAATACCACCCGCCATCTTGGAAATCATAG 68566 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 | || || || ||||||||||| ||||| || || |||||| |||||| || || | Sbjct 68565 CACAAGTCTTCAAGGTATCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGA 68506 Query 72392 AACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCG 72447 | || ||| | || || || ||| || ||||| || | || || || || Sbjct 68505 AGCACGAAGAGAGCTG----CGCCTGGGGAGTACCAGCATTGAACAGAGTGGGGGATGCA 68450 Query 72448 TGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC 72485 || || || | || ||||| || ||||| ||||| Sbjct 68449 TGAGTGAAGAACTTGCTAGACATGAGGTTGTAAGTCTC 68412 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | ||||||||||| |||| | || |||| ||||| ||||| |||||| Sbjct 70117 TCCTGGTCAACAGTAAACTGAATAGGAGCAGCAGCAGCTTGAGTACGGAGATAATACATG 70058 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 || || || ||||| || |||| ||| || ||||| || || | ||| | | Sbjct 70057 CCGGTCTTAAGACCCAGCTTCCACCCGGTGAAGTGCATGCTGGTAATCTTGCCCATGGTG 69998 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 || || ||||| ||||| | |||||| |||||||||||| || || | || ||| Sbjct 69997 GGGTCCTTCATGTGGATATTAAGGGACTGAGATTGATCGATGAAAGCACCACGATCGGCA 69938 Query 70969 GCCAT 70973 ||||| Sbjct 69937 GCCAT 69933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671133797329440