Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq46 192 9e-44
seq116 104 3e-17
>seq46
Length=146035
Score = 192 bits (212), Expect = 9e-44
Identities = 399/585 (68%), Gaps = 12/585 (2%)
Strand=Plus/Minus
Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054
|| || ||||||| ||| ||||| |||||| | |||||||| ||||| |||| || ||
Sbjct 142377 CTTTTCCCCATCAAGTACCATGAGATTTGGCAGATGTACAAGAAGGCCGAGGCTTCGTTC 142318
Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114
||||| | || ||| | |||||||| ||||| || |||| ||| | | || |||
Sbjct 142317 TGGACTGCTGAGGAGATTGATCTGTCTAAGGATCTTCACGACTGGAACAACCGCATGAAC 142258
Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174
| ||||| ||||| || |||||| | || |||||||| | || ||||| ||
Sbjct 142257 AAGGATGAGCAGTTCTTTATCTCTCACATTCTCGCTTTCTTTGCTGCTTCTGATGGCATT 142198
Query 125175 GTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-T 125232
|| ||||| || || ||||| || || || ||| | |||| |||| ||| |
Sbjct 142197 GTGAACGAGAACCTTGTTGAG-CGCTTTTCCGCTGAGGTTCAGGTTCCCGAGGC-TCGCT 142140
Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292
|||| ||||| ||||| |||||||| |||||| | ||||| || | ||||| ||||
Sbjct 142139 GCTTCTACGGTTTCCAGATCATGATGGAGAACATTCACTCTGAGACCTACTCCCTGCTGA 142080
Query 125293 TTGACATGTACATTCGCGATCC-GCAACGTAAACACATGCTCTTTAACGCAATCGACACG 125351
|||| | ||||| || || || | || || ||||||||||| || |||||
Sbjct 142079 TTGATACTTACATCAAGGAGCCCGCCCAGCGCACTTAT-CTCTTTAACGCCATTGACACC 142021
Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG--- 125408
| || | || || ||||| | |||| | |||||| || |||||||
Sbjct 142020 ATTCCCTGCATTCGCCGCAAGGCCGATTGGGCCCTGAAGTGGAT---TGCCGACAAGGAA 141964
Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468
|| | | || | | || || || || || ||||| ||||| |||||||| || |||
Sbjct 141963 TCCACCTTTGCTCAGCGCCTCGTTGCTTTTGCGGCCGTCGAGGGTATCTTCTTCTCCGGT 141904
Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528
||||| ||||||| ||| | ||||| || |||||||| || |||||
Sbjct 141903 GCCTTTGCCTCCATCTTCTGGTTGCGCAAGCGTGGTCTCATGCCTGGCCTGACTTTTTCC 141844
Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573
|| ||| | || ||||| |||||||| || ||| |||||||||
Sbjct 141843 AATGAGCTGATTTCTCGTGACGAGGGTCTTCACACCGACTTTGCC 141799
>seq116
Length=85249
Score = 104 bits (114), Expect = 3e-17
Identities = 312/474 (66%), Gaps = 6/474 (1%)
Strand=Plus/Plus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || ||| | || | || | || |||||||| || |||
Sbjct 68712 CAGGGTGGCAACAAGCGTCCCGGTGCTTTTGCTATTTATCTTGAGCCTTGGCATGCAGAC 68771
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| ||||| || |||| | ||||| || ||| || |||| || ||| | ||
Sbjct 68772 GTATTTGAGTTCCTCGATCTCCGCAAGAATCACGGCAAGGAGGAGGTTCGCGCCCGTGAT 68831
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
|||| ||| || ||| | || ||| ||||||||||||| | | | ||| ||
Sbjct 68832 CTGTTCCTTGCTCTGTGGATCCCTGATCTGTTCATGAAGCGTATTGAGAAGAATGGTGAC 68891
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || ||||||||| || || || || ||| | || |||| ||||| || ||
Sbjct 68892 TGGACTCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCTGACTGCTACGGCGATGAATTC 68951
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174
||||| |||| | || || | ||||| || ||| || | | | || |
Sbjct 68952 GAGGCTCTGTACGAGAAGTATGAAAAGGAGGGTCGTGGCCGTCTAACCA-TTAAGGCTC- 69009
Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
|||| || ||| | ||||| || ||| || ||||| |||| || | ||| | |
Sbjct 69010 AGAAGCTCTGGTATGCCATTCTGGAGGCCCAAACCGAGACCGGAAACCCCTTCATGTTGT 69069
Query 97234 ACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292
||||||| | || || || || |||||||| | |||| |||||| |||||
Sbjct 69070 ACAAGGA-CCATTGCAACCGGAAGAGCAACCAGAAGAATCTGGGTACCATCCGCAGCTCC 69128
Query 97293 AATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346
|| |||||||| || ||| | ||||| |||| || ||| || ||||||
Sbjct 69129 AACCTGTGCACTGAGATTATCGAGTATTGTGCTCCTGATGAGGTTGCTGTTTGC 69182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741053234473440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |