Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq46 192 9e-44 seq116 104 3e-17 >seq46 Length=146035 Score = 192 bits (212), Expect = 9e-44 Identities = 399/585 (68%), Gaps = 12/585 (2%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || ||||||| ||| ||||| |||||| | |||||||| ||||| |||| || || Sbjct 142377 CTTTTCCCCATCAAGTACCATGAGATTTGGCAGATGTACAAGAAGGCCGAGGCTTCGTTC 142318 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | || ||| | |||||||| ||||| || |||| ||| | | || ||| Sbjct 142317 TGGACTGCTGAGGAGATTGATCTGTCTAAGGATCTTCACGACTGGAACAACCGCATGAAC 142258 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 | ||||| ||||| || |||||| | || |||||||| | || ||||| || Sbjct 142257 AAGGATGAGCAGTTCTTTATCTCTCACATTCTCGCTTTCTTTGCTGCTTCTGATGGCATT 142198 Query 125175 GTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-T 125232 || ||||| || || ||||| || || || ||| | |||| |||| ||| | Sbjct 142197 GTGAACGAGAACCTTGTTGAG-CGCTTTTCCGCTGAGGTTCAGGTTCCCGAGGC-TCGCT 142140 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 |||| ||||| ||||| |||||||| |||||| | ||||| || | ||||| |||| Sbjct 142139 GCTTCTACGGTTTCCAGATCATGATGGAGAACATTCACTCTGAGACCTACTCCCTGCTGA 142080 Query 125293 TTGACATGTACATTCGCGATCC-GCAACGTAAACACATGCTCTTTAACGCAATCGACACG 125351 |||| | ||||| || || || | || || ||||||||||| || ||||| Sbjct 142079 TTGATACTTACATCAAGGAGCCCGCCCAGCGCACTTAT-CTCTTTAACGCCATTGACACC 142021 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG--- 125408 | || | || || ||||| | |||| | |||||| || ||||||| Sbjct 142020 ATTCCCTGCATTCGCCGCAAGGCCGATTGGGCCCTGAAGTGGAT---TGCCGACAAGGAA 141964 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 || | | || | | || || || || || ||||| ||||| |||||||| || ||| Sbjct 141963 TCCACCTTTGCTCAGCGCCTCGTTGCTTTTGCGGCCGTCGAGGGTATCTTCTTCTCCGGT 141904 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 ||||| ||||||| ||| | ||||| || |||||||| || ||||| Sbjct 141903 GCCTTTGCCTCCATCTTCTGGTTGCGCAAGCGTGGTCTCATGCCTGGCCTGACTTTTTCC 141844 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 || ||| | || ||||| |||||||| || ||| ||||||||| Sbjct 141843 AATGAGCTGATTTCTCGTGACGAGGGTCTTCACACCGACTTTGCC 141799 >seq116 Length=85249 Score = 104 bits (114), Expect = 3e-17 Identities = 312/474 (66%), Gaps = 6/474 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | || | || | || |||||||| || ||| Sbjct 68712 CAGGGTGGCAACAAGCGTCCCGGTGCTTTTGCTATTTATCTTGAGCCTTGGCATGCAGAC 68771 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || |||| | ||||| || ||| || |||| || ||| | || Sbjct 68772 GTATTTGAGTTCCTCGATCTCCGCAAGAATCACGGCAAGGAGGAGGTTCGCGCCCGTGAT 68831 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| ||| || ||| | || ||| ||||||||||||| | | | ||| || Sbjct 68832 CTGTTCCTTGCTCTGTGGATCCCTGATCTGTTCATGAAGCGTATTGAGAAGAATGGTGAC 68891 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || || || || ||| | || |||| ||||| || || Sbjct 68892 TGGACTCTGATGTGCCCCAACGAGTGCCCTGGCCTGGCTGACTGCTACGGCGATGAATTC 68951 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 ||||| |||| | || || | ||||| || ||| || | | | || | Sbjct 68952 GAGGCTCTGTACGAGAAGTATGAAAAGGAGGGTCGTGGCCGTCTAACCA-TTAAGGCTC- 69009 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| || ||| | ||||| || ||| || ||||| |||| || | ||| | | Sbjct 69010 AGAAGCTCTGGTATGCCATTCTGGAGGCCCAAACCGAGACCGGAAACCCCTTCATGTTGT 69069 Query 97234 ACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292 ||||||| | || || || || |||||||| | |||| |||||| ||||| Sbjct 69070 ACAAGGA-CCATTGCAACCGGAAGAGCAACCAGAAGAATCTGGGTACCATCCGCAGCTCC 69128 Query 97293 AATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 || |||||||| || ||| | ||||| |||| || ||| || |||||| Sbjct 69129 AACCTGTGCACTGAGATTATCGAGTATTGTGCTCCTGATGAGGTTGCTGTTTGC 69182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741053234473440