Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq13 136 9e-27
>seq13
Length=240985
Score = 136 bits (150), Expect = 9e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || || || || || || || ||||| || || |||||||| ||||| | || ||
Sbjct 38403 AAGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGTCCATC 38344
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| || || || ||||| ||||| || | ||||||||| || || || || || || ||
Sbjct 38343 CTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTC 38284
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||||||| | || || || || | |||||| || || ||||| | ||||||||
Sbjct 38283 CTGAATCTTCGACTTCACGTTGTCAATGGTATCAGAAGACTCGACCTCCAAGGTAATAGT 38224
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||||||| || || || || || ||||||||
Sbjct 38223 CTTACCAGTGAGGGTCTTGACGAAGATCTGCAT 38191
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| |||||||| || ||||| || ||||| | ||| || || || || ||||||
Sbjct 38615 GTGGATTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCAAGCTGCTTTCCA 38556
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | ||| || || || || || || || || ||||||||||| | ||
Sbjct 38555 GCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 38496
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | |||||| || || || || || ||||| ||||| ||||| || ||
Sbjct 38495 ACATTGTCAATGGTATCAGAAGACTCAACTTCAAGAGTAATGGTCTTTCCAGTGAGGGTC 38436
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 38435 TTGACGAAAATCTGCAT 38419
Score = 96.9 bits (106), Expect = 8e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| || ||||| || ||||| | ||| || || || || ||||||
Sbjct 37931 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCAAGCTGCTTTCCA 37872
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | ||| || || ||||| || || || || ||||||||||| | ||
Sbjct 37871 GCAAATATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 37812
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|| || || | || ||| | || ||||| || || || ||||| || ||
Sbjct 37811 ACGTTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 37759
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151388899523952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |