Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq53 178 2e-40
seq84 98.7 2e-16
>seq53
Length=136082
Score = 178 bits (196), Expect = 2e-40
Identities = 204/272 (75%), Gaps = 2/272 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| ||| || || ||||| || || || || ||||| ||||
Sbjct 30589 CGCCAAGCGTCACCGCAAGAT-TCTCCGTGACAACATTCAGGGTATTACTAAGCCCGCTA 30531
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||||||||| |||||||||||||| ||||||||| | |||| || |||| || ||||
Sbjct 30530 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTGCCATGATCTACGAGGAGA 30471
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|||| |||| | ||| ||||||| || || |||| |||||| || ||| || |
Sbjct 30470 CCCGTGGTGTTCTCAAGTCCTTCCTCGAGGGTGTCATCCGTGATGCCGTCACCTACACTG 30411
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||||||| | || | ||||| || | || | ||||
Sbjct 30410 AGCACGCCAAGCGCAAGACCGTCACCTCCCTCGACGTTGTCTACGCCCTCAAGAGACAAG 30351
Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
|||| | | || ||||| || ||||| ||
Sbjct 30350 GCCGCACTCTGTACGGTTTCGGTGGTTAAACT 30319
>seq84
Length=108241
Score = 98.7 bits (108), Expect = 2e-16
Identities = 84/101 (83%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| || ||
Sbjct 37022 GCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATTCAGGGTATCACCAAGCCCGCCAT 36964
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||||||| ||||| |||||||| ||||||||| | ||||
Sbjct 36963 TCGTCGTCTCGCTCGCCGTGGTGGTGTCAAGCGTATTTCTG 36923
Score = 80.6 bits (88), Expect = 4e-11
Identities = 116/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| || |||| |||| |||| | ||| ||||| || || || | |||||
Sbjct 36852 TGATCTACGAGGAGACCCGTGGTGTTCTCAAGTCGTTCCTTGAGGGTGTCATTCGTGATG 36793
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| ||||||||||| || || ||||| |||||||| | ||| | ||||| |
Sbjct 36792 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACCTCGCTCGATGTTGTCTACG 36733
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | || || || ||||||| | || ||||| || |||||
Sbjct 36732 CTCTTAAGCGCCAGGGCCGTACTCTGTACGGTTTCGGTGGTTAA 36689
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074611186292
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |