Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq381 131 1e-25
seq4 104 2e-17
>seq381
Length=7755
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||||||| |||||||||| || ||||||||
Sbjct 3901 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGATAGGGACAGTGGGAATCTCGT 3960
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 3961 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 3995
>seq4
Length=358029
Score = 104 bits (114), Expect = 2e-17
Identities = 201/291 (69%), Gaps = 12/291 (4%)
Strand=Plus/Minus
Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTAT 6259
||||||||| ||||| ||||| || ||| ||||| | ||||| ||||| ||||||||
Sbjct 100458 GTTCTACCGTTACAAGATGCCCCGTATCCAAACCAAGATTGAGGGCAAGGGTAACGGTAT 100399
Query 6260 TAAAACCGTCATTGTC---AACAT--GCCTGAAGTCGCTAAGGCGCTCGGACG-CCCTGC 6313
||| || | ||||| ||| | || ||| ||||| || |||| | || ||| |
Sbjct 100398 TAAGACTG---TTGTCACTAACCTGAGCTTGA--TCGCTCAGTCGCTTGCTCGTCCCGGT 100344
Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
|| |||| | || |||||||| | || ||||| |||||||| || | ||
Sbjct 100343 CA-GTACCTCATCAAGTATTTCGGCTTTGAGCTTGGTGCTCAGACCACCAACGACCCTAA 100285
Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433
|||| |||| ||| | || || || ||| || | ||||| |||||| | | |
Sbjct 100284 GGACGACCGCTGGATCATCAATGGTTCCCATGACACCAAGAAGCTCCAGGACCTTGTCTA 100225
Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484
||||| |||| |||||||| ||||| || | ||| | ||||| |||||
Sbjct 100224 TGGCTTCATTCAGAAGTTTGTCCTGTGCCGCAAGTGCAAGAACCCCGAGAC 100174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334944571083164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |