Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq381 131 1e-25 seq4 104 2e-17 >seq381 Length=7755 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||| |||||||||| || |||||||| Sbjct 3901 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGATAGGGACAGTGGGAATCTCGT 3960 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 3961 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 3995 >seq4 Length=358029 Score = 104 bits (114), Expect = 2e-17 Identities = 201/291 (69%), Gaps = 12/291 (4%) Strand=Plus/Minus Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTAT 6259 ||||||||| ||||| ||||| || ||| ||||| | ||||| ||||| |||||||| Sbjct 100458 GTTCTACCGTTACAAGATGCCCCGTATCCAAACCAAGATTGAGGGCAAGGGTAACGGTAT 100399 Query 6260 TAAAACCGTCATTGTC---AACAT--GCCTGAAGTCGCTAAGGCGCTCGGACG-CCCTGC 6313 ||| || | ||||| ||| | || ||| ||||| || |||| | || ||| | Sbjct 100398 TAAGACTG---TTGTCACTAACCTGAGCTTGA--TCGCTCAGTCGCTTGCTCGTCCCGGT 100344 Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 || |||| | || |||||||| | || ||||| |||||||| || | || Sbjct 100343 CA-GTACCTCATCAAGTATTTCGGCTTTGAGCTTGGTGCTCAGACCACCAACGACCCTAA 100285 Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433 |||| |||| ||| | || || || ||| || | ||||| |||||| | | | Sbjct 100284 GGACGACCGCTGGATCATCAATGGTTCCCATGACACCAAGAAGCTCCAGGACCTTGTCTA 100225 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 ||||| |||| |||||||| ||||| || | ||| | ||||| ||||| Sbjct 100224 TGGCTTCATTCAGAAGTTTGTCCTGTGCCGCAAGTGCAAGAACCCCGAGAC 100174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334944571083164