Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq46 138 1e-27
seq116 136 5e-27
>seq46
Length=146035
Score = 138 bits (152), Expect = 1e-27
Identities = 381/580 (66%), Gaps = 7/580 (1%)
Strand=Plus/Plus
Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720
|| || || ||| ||| ||||||||||| | | ||| | || |||||||| || ||
Sbjct 141797 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATCAGCTCATTGGAAAAAGTCAGG 141856
Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780
|| ||||| || |||||||| | ||| || ||||| ||||| | || || |||||
Sbjct 141857 CCAGGCATGAGACCACGCTTGCGCAACCAGAAGATGGAGGCAAAGGCACCGGAGAAGAAG 141916
Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGT 32837
|| || || || |||||||| |||| || | || || | || | ||||
Sbjct 141917 ATACCCTCGACGGCCGCAAAAGCAACGAGGCGCTGAGCAAAGGTGGATTCCTTGTCGGCA 141976
Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897
|||||||| | |||||||||||||| | || || || || || || || |||
Sbjct 141977 ATCCACTTCAGGGCCCAATCGGCCTTGCGGCGAATGCAGGGAATGGTGTCAATGGCGTTA 142036
Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957
|||||||| | | || || | || |||||||||| || || |
Sbjct 142037 AAGAGATAAGTGCGCTGGGCGGGCTCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGTC 142096
Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017
|| || |||||||| || || || || || ||||||||||| | |||||||| || |
Sbjct 142097 TCAGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAACC 142156
Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077
|| || || | |||| || || | | || || ||||| || || ||| || |||
Sbjct 142157 TGAACCTCAGCGGAAAAGCGCTCAACAAGGTTCTCGTTCACAATGCCATCAGAAGCAGCA 142216
Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGT--GTTAGTTTATTCCAA 33134
|| || || | | || ||||| | | || | || || | | || |||||
Sbjct 142217 AAGAAAGCGAGAATGTGAGAGATAAAGAACTGCTCATCCTTGTTCATGCGGTTGTTCCAG 142276
Query 33135 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194
|| | | ||| ||||| | ||| | || || | ||||| || || ||||| |||||
Sbjct 142277 TCGTGAAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAACGAAGCCTCGGCCTTC 142336
Query 33195 TTATACATATTCCAGATGTCATGATA-TTGAATTGGAAAA 33233
|| ||||| | ||| || ||||| || |||| ||||||
Sbjct 142337 TTGTACATCTGCCAAATCTCATGGTACTTGATGGGGAAAA 142376
>seq116
Length=85249
Score = 136 bits (150), Expect = 5e-27
Identities = 398/608 (65%), Gaps = 24/608 (4%)
Strand=Plus/Minus
Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077
|||| ||||| || || | || ||||||| | ||| || || | | || | || |
Sbjct 68928 CCAGGCCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTCACCATTCTTCTCAATACGCT 68869
Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137
|||| || |||||||| ||||| ||||| | || ||||| | || | | ||||| |
Sbjct 68868 TCATGAACAGATCAGGGATCCACAGAGCAAGGAACAGATCACGGGCGCGAACCTCCTCCT 68809
Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197
| || |||||| |||||||||||| | | | || | |||||| || || | |
Sbjct 68808 TGCCGTGATTCTTGCGGAGATCGAGGAACTCAAATACGTCTGCATGCCAAGGCTCAAGAT 68749
Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257
| || || | | | || || || ||||| || ||||| || | || | || ||||| |
Sbjct 68748 AAATAGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCAACATAACGGGCAGTGTTGT 68689
Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317
| | || | | ||| |||| ||||| || || ||||| ||||| || | ||| ||
Sbjct 68688 TGAAGACACGGAGCATGGGAACGATACCGTTAGAAGTACCGTTGGTACCAGCGATGTAAG 68629
Query 63318 TTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375
|| | ||||| ||| || ||| || || || || || ||||| || || ||
Sbjct 68628 AGCCGGTAGCACGGATACGGTGAACGTTG--AGGCCAATACCACCCGCCATCTTGGAAAT 68571
Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435
| || || || || ||||||||||| ||||| || || |||||| |||||| ||
Sbjct 68570 CATAGCACAAGTCTTCAAGGTATCATAGATACCCTCAATGCTGTCATCCTTCATGTCAAC 68511
Query 63436 TAGAAAACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAG 63491
|| || || ||| | || || || ||| || ||||| || | || || |
Sbjct 68510 CAGGAAGCACGAAGAGAGCTG----CGCCTGGGGAGTACCAGCATTGAACAGAGTGGGGG 68455
Query 63492 AAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA----GCT-GAGTC 63546
| || ||||| || | || ||| | || ||||| ||||| | | ||| ||
Sbjct 68454 ATGCATGAGTGAAGAACTTGCTAGACATGAGGTTGTAAGTCTCCAGAACACGCTCGACAT 68395
Query 63547 TAT-ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63605
| | | |||| || || || || |||||||| | ||||||||| || | ||||
Sbjct 68394 TGTCACCCCA------AACGCCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCAA 68341
Query 63606 CGATCTTG 63613
| ||||||
Sbjct 68340 CAATCTTG 68333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633626899262400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |