Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq46 138 1e-27 seq116 136 5e-27 >seq46 Length=146035 Score = 138 bits (152), Expect = 1e-27 Identities = 381/580 (66%), Gaps = 7/580 (1%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||| ||| ||||||||||| | | ||| | || |||||||| || || Sbjct 141797 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATCAGCTCATTGGAAAAAGTCAGG 141856 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||| || |||||||| | ||| || ||||| ||||| | || || ||||| Sbjct 141857 CCAGGCATGAGACCACGCTTGCGCAACCAGAAGATGGAGGCAAAGGCACCGGAGAAGAAG 141916 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGT 32837 || || || || |||||||| |||| || | || || | || | |||| Sbjct 141917 ATACCCTCGACGGCCGCAAAAGCAACGAGGCGCTGAGCAAAGGTGGATTCCTTGTCGGCA 141976 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 |||||||| | |||||||||||||| | || || || || || || || ||| Sbjct 141977 ATCCACTTCAGGGCCCAATCGGCCTTGCGGCGAATGCAGGGAATGGTGTCAATGGCGTTA 142036 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 |||||||| | | || || | || |||||||||| || || | Sbjct 142037 AAGAGATAAGTGCGCTGGGCGGGCTCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGTC 142096 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || |||||||| || || || || || ||||||||||| | |||||||| || | Sbjct 142097 TCAGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAACC 142156 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || || || | |||| || || | | || || ||||| || || ||| || ||| Sbjct 142157 TGAACCTCAGCGGAAAAGCGCTCAACAAGGTTCTCGTTCACAATGCCATCAGAAGCAGCA 142216 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGT-CTGGT--GTTAGTTTATTCCAA 33134 || || || | | || ||||| | | || | || || | | || ||||| Sbjct 142217 AAGAAAGCGAGAATGTGAGAGATAAAGAACTGCTCATCCTTGTTCATGCGGTTGTTCCAG 142276 Query 33135 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194 || | | ||| ||||| | ||| | || || | ||||| || || ||||| ||||| Sbjct 142277 TCGTGAAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAACGAAGCCTCGGCCTTC 142336 Query 33195 TTATACATATTCCAGATGTCATGATA-TTGAATTGGAAAA 33233 || ||||| | ||| || ||||| || |||| |||||| Sbjct 142337 TTGTACATCTGCCAAATCTCATGGTACTTGATGGGGAAAA 142376 >seq116 Length=85249 Score = 136 bits (150), Expect = 5e-27 Identities = 398/608 (65%), Gaps = 24/608 (4%) Strand=Plus/Minus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| ||||| || || | || ||||||| | ||| || || | | || | || | Sbjct 68928 CCAGGCCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTCACCATTCTTCTCAATACGCT 68869 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| || |||||||| ||||| ||||| | || ||||| | || | | ||||| | Sbjct 68868 TCATGAACAGATCAGGGATCCACAGAGCAAGGAACAGATCACGGGCGCGAACCTCCTCCT 68809 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || |||||| |||||||||||| | | | || | |||||| || || | | Sbjct 68808 TGCCGTGATTCTTGCGGAGATCGAGGAACTCAAATACGTCTGCATGCCAAGGCTCAAGAT 68749 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | || || | | | || || || ||||| || ||||| || | || | || ||||| | Sbjct 68748 AAATAGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCAACATAACGGGCAGTGTTGT 68689 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | | || | | ||| |||| ||||| || || ||||| ||||| || | ||| || Sbjct 68688 TGAAGACACGGAGCATGGGAACGATACCGTTAGAAGTACCGTTGGTACCAGCGATGTAAG 68629 Query 63318 TTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 || | ||||| ||| || ||| || || || || || ||||| || || || Sbjct 68628 AGCCGGTAGCACGGATACGGTGAACGTTG--AGGCCAATACCACCCGCCATCTTGGAAAT 68571 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 | || || || || ||||||||||| ||||| || || |||||| |||||| || Sbjct 68570 CATAGCACAAGTCTTCAAGGTATCATAGATACCCTCAATGCTGTCATCCTTCATGTCAAC 68511 Query 63436 TAGAAAACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAG 63491 || || || ||| | || || || ||| || ||||| || | || || | Sbjct 68510 CAGGAAGCACGAAGAGAGCTG----CGCCTGGGGAGTACCAGCATTGAACAGAGTGGGGG 68455 Query 63492 AAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATA----GCT-GAGTC 63546 | || ||||| || | || ||| | || ||||| ||||| | | ||| || Sbjct 68454 ATGCATGAGTGAAGAACTTGCTAGACATGAGGTTGTAAGTCTCCAGAACACGCTCGACAT 68395 Query 63547 TAT-ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63605 | | | |||| || || || || |||||||| | ||||||||| || | |||| Sbjct 68394 TGTCACCCCA------AACGCCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCAA 68341 Query 63606 CGATCTTG 63613 | |||||| Sbjct 68340 CAATCTTG 68333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633626899262400