Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq13 104 2e-17
>seq13
Length=240985
Score = 104 bits (114), Expect = 2e-17
Identities = 147/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||| |||| || || |||| || | || || ||||| ||
Sbjct 37963 ATGCAGATTTTCGTCAAGACTCTGACTGGAAAGACCATTACCTTGGAGGTTGAGTCTTCC 38022
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||||||||| || || ||| || ||| ||||| || || ||||| || ||||
Sbjct 38023 GACACTATCGA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACC 38080
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | || ||||||||||| || | || |||| || || | ||||||||
Sbjct 38081 AGCAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTTCCGATTACA 38140
Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201
| || || || |||||||| || ||
Sbjct 38141 ACATCCAGAAGGAATCCACTCTCCA 38165
Score = 96.9 bits (106), Expect = 3e-15
Identities = 131/180 (73%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG-CA 25081
||||| || ||||||| |||| || ||||| || ||||||||||| | ||| |
Sbjct 37759 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAACGTCAAGTCC 37818
Query 25082 AAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAA 25141
|| | ||| ||||| || || ||||| || ||||| ||||| | || ||||| || ||
Sbjct 37819 AAGATTCA-GGACAAGGAGGGCATTCCTCCGGACCAGCAGCGCCTGATATTTGCTGGAAA 37877
Query 25142 ACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201
|| | || |||| ||||||| || ||| ||||| ||||| || || ||||| || ||
Sbjct 37878 GCAGCTTGAGGATGGTCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCCACTCTCCA 37937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433324598916860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |