Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq13 104 2e-17 >seq13 Length=240985 Score = 104 bits (114), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| |||| || || |||| || | || || ||||| || Sbjct 37963 ATGCAGATTTTCGTCAAGACTCTGACTGGAAAGACCATTACCTTGGAGGTTGAGTCTTCC 38022 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||||||| || || ||| || ||| ||||| || || ||||| || |||| Sbjct 38023 GACACTATCGA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACC 38080 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||||||||| || | || |||| || || | |||||||| Sbjct 38081 AGCAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTTCCGATTACA 38140 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | || || || |||||||| || || Sbjct 38141 ACATCCAGAAGGAATCCACTCTCCA 38165 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG-CA 25081 ||||| || ||||||| |||| || ||||| || ||||||||||| | ||| | Sbjct 37759 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAACGTCAAGTCC 37818 Query 25082 AAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAA 25141 || | ||| ||||| || || ||||| || ||||| ||||| | || ||||| || || Sbjct 37819 AAGATTCA-GGACAAGGAGGGCATTCCTCCGGACCAGCAGCGCCTGATATTTGCTGGAAA 37877 Query 25142 ACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 || | || |||| ||||||| || ||| ||||| ||||| || || ||||| || || Sbjct 37878 GCAGCTTGAGGATGGTCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCCACTCTCCA 37937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324598916860