Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq157 125 6e-24
seq13 122 7e-23
>seq157
Length=65766
Score = 125 bits (138), Expect = 6e-24
Identities = 144/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272
|| |||||||| ||||| ||||| || | || ||||| ||| | || || || || ||
Sbjct 44945 GTCAAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAG 45004
Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332
|| | || ||| | ||| || |||| || || || || |||||||| ||||| ||
Sbjct 45005 TCCTCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCG 45064
Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392
||||| || ||||| || ||||| ||||| ||| | |||||| ||||||| | || ||
Sbjct 45065 GATCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGAC 45124
Query 22393 TACAACATTCAAAA 22406
||||||||||| ||
Sbjct 45125 TACAACATTCAGAA 45138
>seq13
Length=240985
Score = 122 bits (134), Expect = 7e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || || | || || || || | ||||||||||| || | |
Sbjct 38419 ATGCAGATTTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTTGAAGTTGAGTCTTCT 38478
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| || |||| || ||||| ||||||||||| ||||| || || ||
Sbjct 38479 GATACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 38538
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||| || || ||| | |||||| ||||| | ||||| ||||||
Sbjct 38539 CAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTCTGTCCGACTACAAC 38598
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428
||||| || |||||||| | || || |||
Sbjct 38599 ATTCAGAAGGAATCCACTCTCCACTTGGTT 38628
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || ||| | || || || || | || | || || || | ||
Sbjct 37963 ATGCAGATTTTCGTCAAGACTCTGACTGGAAAGACCATTACCTTGGAGGTTGAGTCTTCC 38022
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || |||| || || || ||||||||||| ||||| || || ||
Sbjct 38023 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 38082
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||||||||| ||| | |||||| ||| ||| | ||||||||||||
Sbjct 38083 CAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTTCCGATTACAAC 38142
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || ||||||||
Sbjct 38143 ATCCAGAAGGAATCCAC 38159
Score = 100 bits (110), Expect = 2e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| || || || || || |||| || | ||| | ||||
Sbjct 37759 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAACGTCAAGTCC 37818
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| ||||||||||| ||||| || || || || || || |||||||| || ||
Sbjct 37819 AAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGCCTGATATTTGCTGGAAAG 37878
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
||| | |||||| ||||| | ||||| ||||||||||| || || |||||
Sbjct 37879 CAGCTTGAGGATGGTCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCCAC 37931
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || ||||| || | || | || || || | |
Sbjct 38191 ATGCAGATCTTCGTCAAGACCCTCACTGGTAAGACTATTACCTTGGAGGTCGAGTCTTCT 38250
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| | | || || ||||| ||||||||||| ||||| || ||||||
Sbjct 38251 GATACCATTGACAACGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAA 38310
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || || || || ||| | |||||| || || |||| || ||||||
Sbjct 38311 CAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGACGTACTCTCTCTGACTACAAC 38370
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || |||||
Sbjct 38371 ATCCAGAAGGAGTCCAC 38387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419724705659860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |