Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq157 125 6e-24 seq13 122 7e-23 >seq157 Length=65766 Score = 125 bits (138), Expect = 6e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || |||||||| ||||| ||||| || | || ||||| ||| | || || || || || Sbjct 44945 GTCAAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAG 45004 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 || | || ||| | ||| || |||| || || || || |||||||| ||||| || Sbjct 45005 TCCTCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCG 45064 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||| || ||||| || ||||| ||||| ||| | |||||| ||||||| | || || Sbjct 45065 GATCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGAC 45124 Query 22393 TACAACATTCAAAA 22406 ||||||||||| || Sbjct 45125 TACAACATTCAGAA 45138 >seq13 Length=240985 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || | ||||||||||| || | | Sbjct 38419 ATGCAGATTTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTTGAAGTTGAGTCTTCT 38478 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || ||||| ||||||||||| ||||| || || || Sbjct 38479 GATACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 38538 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| || || ||| | |||||| ||||| | ||||| |||||| Sbjct 38539 CAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTCTGTCCGACTACAAC 38598 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||| || |||||||| | || || ||| Sbjct 38599 ATTCAGAAGGAATCCACTCTCCACTTGGTT 38628 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||| | || || || || | || | || || || | || Sbjct 37963 ATGCAGATTTTCGTCAAGACTCTGACTGGAAAGACCATTACCTTGGAGGTTGAGTCTTCC 38022 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || ||||||||||| ||||| || || || Sbjct 38023 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 38082 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||| | |||||| ||| ||| | |||||||||||| Sbjct 38083 CAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTTCCGATTACAAC 38142 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || |||||||| Sbjct 38143 ATCCAGAAGGAATCCAC 38159 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || || |||| || | ||| | |||| Sbjct 37759 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAACGTCAAGTCC 37818 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| ||||| || || || || || || |||||||| || || Sbjct 37819 AAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGCCTGATATTTGCTGGAAAG 37878 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||||| | ||||| ||||||||||| || || ||||| Sbjct 37879 CAGCTTGAGGATGGTCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCCAC 37931 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| || | || | || || || | | Sbjct 38191 ATGCAGATCTTCGTCAAGACCCTCACTGGTAAGACTATTACCTTGGAGGTCGAGTCTTCT 38250 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || || ||||| ||||||||||| ||||| || |||||| Sbjct 38251 GATACCATTGACAACGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAA 38310 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | |||||| || || |||| || |||||| Sbjct 38311 CAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGACGTACTCTCTCTGACTACAAC 38370 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 38371 ATCCAGAAGGAGTCCAC 38387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419724705659860