Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq46 172 1e-37 seq116 161 2e-34 seq53 114 3e-20 seq80 104 5e-17 >seq46 Length=146035 Score = 172 bits (190), Expect = 1e-37 Identities = 559/856 (65%), Gaps = 23/856 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || || || ||||||||||||||||||||| | Sbjct 141530 TCGAAGAAGTTGGTCTTGCCACCAAGCGAAATGTTCTCCATGAAGTCGAAGGGGTTGGAA 141589 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | ||||| || |||| | ||||| || || ||||| | Sbjct 141590 GCCTTGTAGACCTTCTCGTTACCAAGGGCAACGAGAAGACGGTCGGCAACGAACTCGATG 141649 Query 251683 TACTGTCC-CATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGAT 251741 ||| ||| ||| || |||| |||||| || | | ||| || | ||||| | Sbjct 141650 TAC-GTCTTCATGAGGTCAGCGTTCATACCGAGAAGGGCACAGGGCAGGGCCTCGGTAAG 141708 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAGA 251796 ||| ||||| || | || || || || | ||| ||| ||| || ||| || Sbjct 141709 GAACTCCTTCTCAATAGCGACAGCATCGGTGATGATTTCCTGGATCAGTTGCTTGCTAGG 141768 Query 251797 GACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCG 251856 | | ||||| || | ||||||| ||| | |||| | ||| ||||||||| Sbjct 141769 GC--GGTTGTTG---AGGTGAGAGTACAAGAGGCAGGCAAAGTCGGTGTGAAGACCCTCG 141823 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 || ||| || | ||| ||||| | | |||||||||||| | ||||| || | | | Sbjct 141824 TCACGAGAAATCAGCTCATTGGAAAAAGTCAGGCCAGGCATGAGACCACGCTTGCGCAAC 141883 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 |||||||| | | ||||| || ||||| | | ||||||||| | | | ||||| Sbjct 141884 CAGAAGATGGAGGCAAAGGCACCGGAGAAGAAGATACCCTCGACGGCCGCAAAAGCAACG 141943 Query 251977 AGGCGCTCAGCAAACGACTTGTCCT--GCGACAA-GAACTTCTGTGCCCATGCTGCCTTC 252033 ||||||| |||||| | |||| || ||| ||||| | ||||| | ||||| Sbjct 141944 AGGCGCTGAGCAAAGGTGGATTCCTTGTCGGCAATCCACTTCAGGGCCCAATCGGCCTTG 142003 Query 252034 TTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCC 252093 | || ||| || || || || || | ||||||| | | |||| ||| ||| Sbjct 142004 CGGCGAATGCAGGGAATGGTGTCAATGGCGTTAAAGAGATAAGTGCGCTGGGCGGGCTCC 142063 Query 252094 TCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATC 252153 | |||| | ||||| ||| || ||||| |||| || || ||| || | | ||| Sbjct 142064 TTGATGTAAGTATCAATCAGCAGGGAGTAGGTCTCAGAGTGAATGTTCTCCATCATGATC 142123 Query 252154 TGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCA 252213 ||| || | ||||| || || || | || || | ||||||| | || Sbjct 142124 TGGAAACCGTAGAAGCAGCGAGCCTCGGGAACCTGAACCTCAGCGGAAAAGCGCTCAACA 142183 Query 252214 ATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAG 252273 | |||||| |||| |||||||| | |||||||| | |||||| ||| ||| Sbjct 142184 AGGTTCTCGTTCACAATGCCATCAGAAGCAGCAAAGAAAGCGAGAATGTGAGAGATAAAG 142243 Query 252274 TGACGCTCATCGTCGT---TGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGA 252330 ||||||| | || || | |||| ||||||| || |||| | |||| | Sbjct 142244 AACTGCTCATCCTTGTTCATGCGGTTGT---TCCAGTCGTGAAGATCCTTAGACAGATCA 142300 Query 252331 ACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGG 252389 | || || | |||||||| | | | | |||||||||||||| ||| || | ||| | Sbjct 142301 ATCTCCTCAGCAGTCCAGAACGAAGCCTCGGCCTTCTTGTACATCTGCCAA-ATCTCATG 142359 Query 252390 GTACTTGATTGGGAAA 252405 ||||||||| |||||| Sbjct 142360 GTACTTGATGGGGAAA 142375 >seq116 Length=85249 Score = 161 bits (178), Expect = 2e-34 Identities = 431/654 (66%), Gaps = 11/654 (2%) Strand=Plus/Minus Query 293122 TGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGAGATCTCC 293181 ||||||| || ||||||||||| ||||| | | || || || | ||| || ||| Sbjct 69964 TGATCGATGAAAGCACCACGATCGGCAGCCATCTGAACAACGGTACGCTGAGAAATTTCC 69905 Query 293182 CACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTGGATAGAC 293241 ||| |||||||||| ||||||| ||||| | |||| | | || || || || Sbjct 69904 CACACAGTCTTGTACAGAGCCTTGATATCAGCAGGAATACTGGGGATGTTTTGAATGGAA 69845 Query 293242 CCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGCAATGAGC 293301 || || |||||| || |||||||||| | || ||||| ||| | | | || Sbjct 69844 CCGTTGTCGGCAATGATACGGTTCTTCATGTTATCAGACCACAGGCCAAGGTCGACCAGA 69785 Query 293302 TCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGTAA 293361 ||||||| | | | ||| ||||| ||||||||||||| || || || ||| Sbjct 69784 TCGCGGAGCAACCACGGGTTAACAACCTGGAACTCACCAGCCAGGACACGGCGCTGGTAG 69725 Query 293362 ATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAGTAGATGCG 293421 ||||| || ||| |||||| ||| || |||||| | |||| ||| Sbjct 69724 ATGTTGGAGGTGTATGGTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTACTGGCG 69665 Query 293422 GTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACC---CTTCTTGACACGCGATTCG 293478 || ||||| ||||| |||||||| | ||||| |||||||| || | Sbjct 69664 GTCGGCATGGGAGCAAGGAGAAGAGAGTTGCGAACACCGTTCTTCTTGATCTGCTCCTTA 69605 Query 293479 AGACCCGCCCAGTCC-AGAGCAGTCTGAGGTGTAACACCCCAGAGATGATACTGCATGAT 293537 ||| | ||||||| | || ||| || || || |||| | || | |||| | ||| Sbjct 69604 AGAGAAGTCCAGTCCCAAAGGTCACTGGGG-GTGACGTCCCACATATCAAACTGGAGGAT 69546 Query 293538 ACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCA---TCAGAGAG 293594 ||||| | | | ||||| ||||| |||| | | | || |||| | ||||| Sbjct 69545 ACCCTGGGAGACGGGAGAGCCCTCGTAGGTTGAGTACGTACC---CTCAATTTGAGAGAT 69489 Query 293595 CTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTTGAGCTT 293654 ||||||||| ||||| | ||| || ||||||| ||| ||||||| | ||| | | Sbjct 69488 CTCGCAAGACGCCTCCAGAGCGGCGTGGTAAATGGTCTCAAAGATCTGAGTGTTCAATTG 69429 Query 293655 GCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCAGACCCTG 293714 |||||| | | || ||||| ||||| ||| | ||| |||| |||||||| Sbjct 69428 GCGAGCTTCAGCTGACTCAAAGGGCATGCGCAGAGCTAGGAAGGCATCAGCAAGACCCTG 69369 Query 293715 TACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAAC 293768 ||||| ||||||| ||| || | ||| ||||||| | | ||||||||||| Sbjct 69368 AACACCCACACCAATGGGACGGTGGCGCATGTTGCTGTTGTAAGCCTCGGGAAC 69315 >seq53 Length=136082 Score = 114 bits (126), Expect = 3e-20 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||||||||| |||| ||||| ||||| ||||||| |||||||| || ||| Sbjct 113666 GGTGAGGATCTGTGCAACTGCACCTTCTCCCTCGCCTATGGTGCTAAGATTCTTCTTAAC 113607 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| | ||||||||| | || || ||||| ||||||||| || | Sbjct 113606 CAGACTCACCTCCGTCTTAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 113547 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 113546 GGCAAGTCCACCCTCATGCGTGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 113488 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 |||||||| | ||| || | || ||||||||| | ||||| Sbjct 113487 GTCTGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGACTC 113446 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||||||||| | ||| | ||||||| ||||| ||||| ||||| | Sbjct 112294 CCAACTTCGGTCTGGACGCTGAGCTGGTTTCTCACTCGCGCATGAAGGGTCTGTCTGGTG 112235 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| ||||| | | || |||| ||||| | || ||| |||||||| Sbjct 112234 GTCAGCGTGTCAAGGTTGTCCTTGCCGCCTGCTCA-TGGCAGCGTCCCCACTTGATCGTT 112176 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTGAGTGCTGCTCTG 280850 || |||||||||||||||||||| || || || || || |||||| |||||| Sbjct 112175 CTTGACGAGCCTACCAACTATCTCGATCGTGACTCGCTTGGTGCTCTGTCCAAGGCTCTG 112116 Query 280851 GACACATTTGGCGGCGGCGTCGTAGTCATTTCTCAC 280886 | || || | || || ||| | ||||| ||||| Sbjct 112115 GTCAACTTCGAGGGTGGTGTCATCATCATTACTCAC 112080 >seq80 Length=109397 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 279693 CCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTA 279752 || || |||||||||||||||||||||||||||||||| ||||| |||| ||||| || Sbjct 89665 CCCGTTGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTTGCCCTGGCTCGTGCCATGCTT 89606 Query 279753 CTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTA 279812 | || |||||| | |||| || ||||| || ||||| | ||| | ||||| Sbjct 89605 CAAAAGGCTGATGTCTTGTTGCTGGACGAGCCTACTAACCATCTTGACGTTGCTAACGTT 89546 Query 279813 GCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 || ||| | | | ||||| | || || || | | || || || || |||||| Sbjct 89545 GCGTGGTTGGAGAATTACCTTAACACTCACCCTGATATCACCTCACTAATCGTATCTCAC 89486 Query 279873 GACTCTGGCTTCCTAGA 279889 |||||||| ||||| || Sbjct 89485 GACTCTGGTTTCCTCGA 89469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027828319061604