Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq13 113 4e-20
>seq13
Length=240985
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | ||| | || | || || || || || |||||||| ||
Sbjct 38420 ATACCACCACGGAGACGAAGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCA 38361
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| |||||| ||| ||||| || ||||||||| | |||||||||||||| |||||
Sbjct 38360 GAGAGAGTACGTCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGATCCGGG 38301
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| |||||| || | | |||| ||| || | || |||
Sbjct 38300 GGAATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTGTCAATGGTATCAGAAGACTCG 38241
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| | || || || || || || || || || ||||||||
Sbjct 38240 ACCTCCAAGGTAATAGTCTTACCAGTGAGGGTCTTGACGAAGATCTGCAT 38191
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || | || | || ||||| || || ||||||||||||
Sbjct 38192 ATACCACCACGGAGACGAAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCG 38133
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||||| ||| ||||| || || || || |||| || ||||| |||||||||
Sbjct 38132 GAAAGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGA 38073
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| ||||| || | | || | ||||||| || ||
Sbjct 38072 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCA 38013
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| | || || || |||||||| || || |||||||||||
Sbjct 38012 ACCTCCAAGGTAATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 37963
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215
|| ||||| || | | ||| || || | || ||||| || ||||||||||| ||| |
Sbjct 38645 CCACCACGGAGACGAAGAACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAC 38586
Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275
| ||| ||| ||| ||||| || || ||||| |||| || ||||| |||||||| |||
Sbjct 38585 AGAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 38526
Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335
||||| || ||||| |||||| || | | |||| ||| || | || || ||
Sbjct 38525 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTATCAGAAGACTCAACT 38466
Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || || || || || || || |||||||||||
Sbjct 38465 TCAAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 38419
Score = 96.9 bits (106), Expect = 3e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || | || | || || || || ||||||||||| |||
Sbjct 37964 ATACCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCG 37905
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||| ||| ||| ||||| || || ||||| | || || ||||| |||||||||
Sbjct 37904 GACAGAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAATATCAGGCGCTGCTGGTCCGGA 37845
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| |||||| || | | || | ||||||| ||| ||
Sbjct 37844 GGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTCA 37785
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358
|| || | ||| | || ||||||||
Sbjct 37784 ACCTCGAGGGTGATGGTCTTGCCGGT 37759
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420131102470128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |