Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq46 311 2e-79 seq116 255 1e-62 >seq46 Length=146035 Score = 311 bits (344), Expect = 2e-79 Identities = 606/878 (69%), Gaps = 34/878 (4%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| || || ||| |||||||||||||| || || |||||| || Sbjct 142368 ATCAAGTACCATGAGATTTGGCAGATGTACAAGAAGGCCGAGGCTTCGTTCTGGACTGCT 142309 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA----GAACGA 42400 ||||||||||| ||| | ||||| || |||| | || | ||| | | || Sbjct 142308 GAGGAGATTGATCTGTCTAAGGATCTTCACGACTGGAACA-ACCGCATGAACAAGGATGA 142250 Query 42401 AAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGA 42460 |||| || || |||| || || ||||| || || ||||| ||||| || || || Sbjct 142249 GCAGTTCTTTATCTCTCACATTCTCGCTTTCTTTGCTGCTTCTGATGGCATTGTGAACGA 142190 Query 42461 GAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGG 42520 |||||| | | || ||||| ||| ||||| |||||||||||||| Sbjct 142189 GAACCTTGTTGAGCGCTTTTCCGCTGAGGTTCAGGTTCCCGAGGCTCGCTGCTTCTACGG 142130 Query 42521 CTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTA 42580 |||||||| || |||||| | ||||||||| ||| || ||| | | || || Sbjct 142129 TTTCCAGATCATGATGGAGAACATTCACTCTGAGACCTACTCCCTGCTGATTGATACTTA 142070 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 |||| ||| |||| | |||| | || || || ||||| || || || |||||||| Sbjct 142069 CATCAAGGAGCCCGCCCAGCGCACTTATCTCTTTAACGCCATTGACACCATTCCCTGCAT 142010 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGAT---CGAGAGTCCCGACGCAACGTTCGG 42697 ||||| || ||||| || || ||||| ||| | || | || || | Sbjct 142009 TCGCCGCAAGGCCGATTGGGCCCTGAAGTGGATTGCCGACA---AGGAATCCACCTTTGC 141953 Query 42698 CGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTC 42757 || | || || || ||| | ||||||||||| ||||||||||| || ||||| ||||| Sbjct 141952 TCAGCGCCTCGTTGCTTTTGCGGCCGTCGAGGGTATCTTCTTCTCCGGTGCCTTTGCCTC 141893 Query 42758 CATCTTCTG---GCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 ||||||||| || ||||| ||| || ||||| || || || || || || || || Sbjct 141892 CATCTTCTGGTTGCGCAAGC--GTGGTCTC-ATGCCTGGCCTGACTTTTTCCAATGAGCT 141836 Query 42815 CATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCT 42874 || | |||||||| || || | ||||||||||||||| ||| ||| ||||| Sbjct 141835 GATTTCTCGTGACGAGGGTCTTCACACCGACTTTGCCTGCCTCTTGTACTC---TCACCT 141779 Query 42875 CAGGCACAA--GCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931 || |||| ||||| | ||| | | | ||| || |||||||| || || || | || Sbjct 141778 CA---ACAACCGCCCTAGCAAGCAACTGATCCAGGAAATCATCACCGATGCTGTCGCTAT 141722 Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGACC 42990 |||||||||||||| || || | |||||| ||| |||| |||| |||||| |||| Sbjct 141721 TGAGAAGGAGTTCCTTACCGAGGCCCTGCCCTGTG-CCCTTCTCGGTATGAACGCTGACC 141663 Query 42991 TCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT--GTGCCAGATGGGTCTC-A 43047 ||||| | ||||||| ||| ||| ||||||| ||| || |||| | ||| | | Sbjct 141662 TCATGAAGACGTACATCGAGTTCGTTGCCGACCGTCTTCTCGTTGCC--CTTGGTAACGA 141605 Query 43048 GCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCA 43107 | | ||||||| | | |||||||||||| ||||||||||| ||| | | |||| Sbjct 141604 GAAG-GTCTACAAGGCTTCCAACCCCTTCGACTTCATGGAGAACATTTCGCTTGGTGGCA 141546 Query 43108 AGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||| |||||||||||||| | || |||||| Sbjct 141545 AGACCAACTTCTTCGAGAAGCGCGTTGGTGATTACCAG 141508 >seq116 Length=85249 Score = 255 bits (282), Expect = 1e-62 Identities = 924/1436 (64%), Gaps = 41/1436 (3%) Strand=Plus/Minus Query 243997 GATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAG 244056 |||||| || | || || |||| | | |||| || | ||||||||| |||||| Sbjct 69860 GATGTTTTGAATGGAACCGTTGTCGGCAATGATACGGTTCTTCATGTTATCAGACCACAG 69801 Query 244057 GCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAG 244116 ||| | | |||| | || || | ||| || ||||| ||||| || | ||| Sbjct 69800 GCCAAGGTCGACCAGATCGCGGAGCAACCACGGGTTAACAACCTGGAACTCACCAGCCAG 69741 Query 244117 CACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTAT 244176 || ||||||||||||| |||| | || || |||| || ||| |||||||||| || Sbjct 69740 GACACGGCGCTGGTAGATGTTGGAGGTGTATGGTTCGAAGCACTCGTTGTTGCCCAGAAT 69681 Query 244177 CTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCT 244236 ||||| || || || ||||||||||| | | || ||| ||| | || |||| | | Sbjct 69680 CTGCGAAGTACTGGCGGTCGGCATGGGAGCAAGGAGAAGAGAGTTGCGAACACCGTTCTT 69621 Query 244237 CTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAG 244296 || ||| | | || |||||||||| | |||| | | ||| Sbjct 69620 CTTGATCTGCTCCTTAAGAGAAGTCCAGTCCCAAA---------GGTCACTGGGGGTGAC 69570 Query 244297 GCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTA 244356 | ||||||| |||||||| || | |||| | |||||| |||||||||||| | ||| Sbjct 69569 GTCCCACATATCAAACTGGAGGATACCCTGGGAGACGGGAGAGCCCTCGTAGGTTGAGTA 69510 Query 244357 GGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTC 244416 | ||| || || | | || || | | || || ||||||| ||| |||||||| Sbjct 69509 CGTACCCTCAATTTGAGAGATCTCGCAAGACGCCTCCAGAGCGGCGTGGTAAATGGTCTC 69450 Query 244417 GAAGATCATCTTGTTCATGTCGCGGGCCT----TGCCGCAGGTGAAGGGGATGCCCATCA 244472 |||||| |||||| | ||| || | || | || ||||| |||| || Sbjct 69449 AAAGATCTGAGTGTTCAATTGGCGAGCTTCAGCTGACTCA----AAGGGCATGCGCAGAG 69394 Query 244473 TCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGG 244532 | |||| | || || || ||||| || || | || ||||| | ||| ||| ||||| Sbjct 69393 CTAGGAAGGCATCAGCAAGACCCTGAACACCCACACCAATGGGACGGTGGCGCATGTTGC 69334 Query 244533 AGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGG 244592 | || ||||| |||||||| |||| |||| || | ||| | |||||| Sbjct 69333 TGTTGTAAGCCTCGGGAACGGGGTAGTGGTTGACGTCAATGATGCGGTTCAAGTTGCGAA 69274 Query 244593 TGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGA 244652 | | | ||| ||| |||| ||| |||||||| || | | || | Sbjct 69273 CAACAACCTTGGTGACCTCGTGCAGCTTCTGGAAGTCGTATGAGTTG------TTGGTG- 69221 Query 244653 TGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCT 244712 | || | |||||| || ||| || | | ||| |||||||| || || ||||| | Sbjct 69220 TAGTCA-----ACAAACGCGGGGAGAGCCAAGGAGGCAAGGTTGCAAACAGCAACCTCAT 69166 Query 244713 CCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGT 244772 | | |||| || |||||| ||||| ||||| || |||||| ||||| | Sbjct 69165 CAGGAGCACAATACTCGATAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCCAGAT 69106 Query 244773 GCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCT 244832 || || ||| ||| |||||| ||||||||| | ||||||||| ||||||| Sbjct 69105 TCTTCTGGTTGCTCTTCCGGTTGCAATGGTCCTTGTACAACATGAAGGGGTTTCCGGTCT 69046 Query 244833 CGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCT 244892 || ||||| | || | | | |||||| | | |||||| | || || ||| Sbjct 69045 CGGTTTGGGCCTCCAGAATGGCATACCAGAGCTTCTGAGCCTTAATGGTTAGACG-GCCA 68987 Query 244893 TG-CCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCT 244951 | ||||| || || |||||| |||||||| || ||| || || | Sbjct 68986 CGACCCTCCTTTTCATACTTCTCGTACAGAGCCTCGAATTCATCGCCGTAGCAGTCAGCC 68927 Query 244952 AGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGC 245011 ||||| |||||| |||||||| ||| |||| || || | || | | || | Sbjct 68926 AGGCCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTCACCATTCTTCTCAATACGCTTC 68867 Query 245012 ATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAG 245071 ||||| || || |||||||| || || |||| || || | || | ||| ||| | Sbjct 68866 ATGAACAGATCAGGGATCCACAGAGCAAGGAACAGATCACGGGCGCGAACCTCCTCCTTG 68807 Query 245072 CCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 || ||| ||||| | || || | || ||||| ||||| | ||||| ||||| | || Sbjct 68806 CC-GTGATTCTTGCGGAGATCGAGGAACTCAAATACGTCTGCATGCCAAGGCTCAAGATA 68748 Query 245131 GACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG-CGT 245189 | ||| | || ||||| ||||||||||| ||||||| || ||| || | || Sbjct 68747 AATAGCAAAAGCACCGGGACGCTTGTTGCCACCCTGGT-CAACATAACGGGCAGTGTTGT 68689 Query 245190 TGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGG 245249 |||||| || || | || || || |||||||| |||||||| || |||||| | Sbjct 68688 TGAAGACACGGAGCATGGGAACGATACCGTTAGAAGTACCGTTGGTACCAGCGATGTAAG 68629 Query 245250 CGCCCTTGCCCCTGA---GGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGA 245306 ||| | | | || ||| | || | ||| | || || || |||||| | Sbjct 68628 AGCCGGTAGCACGGATACGGTGAACGTTG---AGGCCAATACCACCCGCCATCTTGGAAA 68572 Query 245307 TGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGA 245366 | | || || |||| | ||| || || ||||| |||||||| |||||||| | Sbjct 68571 TCATAGCACAAGTCTTCAAGGTATCATAGATACCCTCAATGCTGTCATCCTTCATGTCAA 68512 Query 245367 GCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGG 245422 ||| ||||| || || ||||| | || ||| | | | ||||||||||||||| Sbjct 68511 CCAGGAAGCACGAAGAGAGCTGCGCCTGGGGAGTACCAGCATTGAACAGAGTGGGG 68456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944331598069440