Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq13 114 3e-20
seq3 98.7 2e-15
seq157 93.3 1e-13
seq46 93.3 1e-13
>seq13
Length=240985
Score = 114 bits (126), Expect = 3e-20
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || || || | ||| || || ||||| || ||||| | |
Sbjct 38417 CCACCACGGAGACGAAGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 38358
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || ||||| || || | || || || ||||| || |||||||||||| || |||
Sbjct 38357 AGAGTACGTCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGA---TCCGGG 38301
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || ||||| || |||| |||||||| || || | ||| || ||
Sbjct 38300 GGAATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTGTCAATGGTATCAGAAGACTCG 38241
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | || || ||||| || || || ||||||||||| ||||||||
Sbjct 38240 ACCTCCAAGGTAATAGTCTTACCAGTGAGGGTCTTGACGAAGATCTGCAT 38191
Score = 104 bits (114), Expect = 6e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || || || | ||| ||| || ||||| || || ||||
Sbjct 38189 CCACCACGGAGACGAAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAA 38130
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || || || || |||||||| ||||| || ||
Sbjct 38129 AGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGA 38070
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || || || || |||| ||| || || ||
Sbjct 38069 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACC 38010
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | || || ||||| || ||||||||||||||||| ||||||||
Sbjct 38009 TCCAAGGTAATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 37963
Score = 102 bits (112), Expect = 2e-16
Identities = 163/233 (70%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| ||||| ||||| | ||| || | || | ||| ||| || || || || ||||||
Sbjct 38648 TGGCCACCACGGAGACGAAGAACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCG 38589
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || ||||| || || || | || ||||| || |||||||| ||||| || ||
Sbjct 38588 GACAGAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGG---TCC 38532
Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420
||| || || || || ||||| || || | || || || || || | ||| ||
Sbjct 38531 GGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTATCAGAAGAC 38472
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| || || || ||||| || || || ||||||||||| ||||||||
Sbjct 38471 TCAACTTCAAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 38419
>seq3
Length=407529
Score = 98.7 bits (108), Expect = 2e-15
Identities = 155/221 (70%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || || || | ||| || || ||||| || ||||| | |
Sbjct 21592 CCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 21533
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || ||||||||||| ||||| || || |||
Sbjct 21532 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGG---TCCGGG 21476
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || ||||||||||| || | || ||||| || || | || || ||
Sbjct 21475 GGAATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCG 21416
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| || || || || ||||| || ||||| |||||||||||
Sbjct 21415 ACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 21375
>seq157
Length=65766
Score = 93.3 bits (102), Expect = 1e-13
Identities = 136/191 (71%), Gaps = 6/191 (3%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| || || || ||||| | || ||||| || || || | || || || || ||||||
Sbjct 45138 TTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 45079
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||||||| ||| || ||| || || || ||||||||||| || | || || ||
Sbjct 45078 AGACGCTGCTGA---TCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTG 45022
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || || || ||||| || |||||||| || || || ||||| |||
Sbjct 45021 TCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTAACG 44962
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 44961 AAAATCTGCAT 44951
>seq46
Length=146035
Score = 93.3 bits (102), Expect = 1e-13
Identities = 119/162 (73%), Gaps = 4/162 (2%)
Strand=Plus/Minus
Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212
|||||||||| || || |||||||| || ||||| ||||| || || ||| ||||
Sbjct 141680 TCGGTATGAACGCTGACCTCATGAAGACGTACATCGAGTTCGTTGCCGACCGT--CTTCT 141623
Query 269213 CG--GCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACT 269270
|| || || ||| | ||||| || ||||| | || ||||||| ||| |||||
Sbjct 141622 CGTTGCCCTTGGTAACGAGAAGGTCTACAAGGCTTCCAACCCCTTCGACTTCATGGAGAA 141563
Query 269271 AATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGT 269312
|||||||| | || ||||| ||||||||||| ||||| ||
Sbjct 141562 CATTTCGCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGCGT 141521
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179644666376632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |