Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq13 114 3e-20 seq3 98.7 2e-15 seq157 93.3 1e-13 seq46 93.3 1e-13 >seq13 Length=240985 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || || | ||| || || ||||| || ||||| | | Sbjct 38417 CCACCACGGAGACGAAGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 38358 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| || || | || || || ||||| || |||||||||||| || ||| Sbjct 38357 AGAGTACGTCCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGA---TCCGGG 38301 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| || |||| |||||||| || || | ||| || || Sbjct 38300 GGAATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTTGTCAATGGTATCAGAAGACTCG 38241 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | || || ||||| || || || ||||||||||| |||||||| Sbjct 38240 ACCTCCAAGGTAATAGTCTTACCAGTGAGGGTCTTGACGAAGATCTGCAT 38191 Score = 104 bits (114), Expect = 6e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || || | ||| ||| || ||||| || || |||| Sbjct 38189 CCACCACGGAGACGAAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAA 38130 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || |||||||| ||||| || || Sbjct 38129 AGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGA 38070 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || || || || |||| ||| || || || Sbjct 38069 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACC 38010 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || ||||| || ||||||||||||||||| |||||||| Sbjct 38009 TCCAAGGTAATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 37963 Score = 102 bits (112), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | ||| || | || | ||| ||| || || || || |||||| Sbjct 38648 TGGCCACCACGGAGACGAAGAACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCG 38589 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || ||||| || || || | || ||||| || |||||||| ||||| || || Sbjct 38588 GACAGAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGG---TCC 38532 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| || || || || ||||| || || | || || || || || | ||| || Sbjct 38531 GGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTATCAGAAGAC 38472 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || || ||||| || || || ||||||||||| |||||||| Sbjct 38471 TCAACTTCAAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 38419 >seq3 Length=407529 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| || || ||||| || ||||| | | Sbjct 21592 CCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 21533 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||| ||||| || || ||| Sbjct 21532 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGG---TCCGGG 21476 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || ||||||||||| || | || ||||| || || | || || || Sbjct 21475 GGAATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCG 21416 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || || || || || ||||| || ||||| ||||||||||| Sbjct 21415 ACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 21375 >seq157 Length=65766 Score = 93.3 bits (102), Expect = 1e-13 Identities = 136/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || || || || ||||| | || ||||| || || || | || || || || |||||| Sbjct 45138 TTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 45079 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||||| ||| || ||| || || || ||||||||||| || | || || || Sbjct 45078 AGACGCTGCTGA---TCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTG 45022 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || ||||| || |||||||| || || || ||||| ||| Sbjct 45021 TCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTAACG 44962 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 44961 AAAATCTGCAT 44951 >seq46 Length=146035 Score = 93.3 bits (102), Expect = 1e-13 Identities = 119/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212 |||||||||| || || |||||||| || ||||| ||||| || || ||| |||| Sbjct 141680 TCGGTATGAACGCTGACCTCATGAAGACGTACATCGAGTTCGTTGCCGACCGT--CTTCT 141623 Query 269213 CG--GCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACT 269270 || || || ||| | ||||| || ||||| | || ||||||| ||| ||||| Sbjct 141622 CGTTGCCCTTGGTAACGAGAAGGTCTACAAGGCTTCCAACCCCTTCGACTTCATGGAGAA 141563 Query 269271 AATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGT 269312 |||||||| | || ||||| ||||||||||| ||||| || Sbjct 141562 CATTTCGCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGCGT 141521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179644666376632