Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 1e-15 seq3 91.5 2e-13 >seq13 Length=240985 Score = 98.7 bits (108), Expect = 1e-15 Identities = 127/170 (75%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || | |||||| || | || || |||||||| ||||| || Sbjct 37926 CTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAA 37867 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||| || ||||||||||| | || | || |||||||||| ||| | || | |||| || Sbjct 37866 TATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGA-CG 37809 Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 | | | | |||||| || || || |||| |||||||| ||||| || Sbjct 37808 TTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 37759 Score = 93.3 bits (102), Expect = 5e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||||| ||| |||||| || || ||||| |||| ||||| || | || || Sbjct 38399 ACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGTCCATCCTCA 38340 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 ||||||||||||||||| ||||| ||||| || || | || | || |||||||||| || Sbjct 38339 AGCTGCTTACCAGCGAAAATGAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCC-TG 38281 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | | || | | ||| | | | || || || || || || | || || || || Sbjct 38280 AATCTTCGACTTCACGTTGTCAATGGTATCAGAAGACTCGACCTCCAAGGTAATAGTCTT 38221 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| || ||||| ||||| Sbjct 38220 ACCAGTGAGGGTCTTGACGAAGATCTGCAT 38191 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| ||||| ||||| ||||| || | |||||| || | || || Sbjct 38627 ACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCA 38568 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| ||||| || || || ||||||||||| | || | || |||||||||| || Sbjct 38567 AGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-TG 38509 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | | || | |||| | | | || || || || || || | || ||||| || Sbjct 38508 AATCTTGGACTTGACATTGTCAATGGTATCAGAAGACTCAACTTCAAGAGTAATGGTCTT 38449 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| || || || ||||| Sbjct 38448 TCCAGTGAGGGTCTTGACGAAAATCTGCAT 38419 >seq3 Length=407529 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| |||| ||||| || | || || |||||||| |||||||| Sbjct 21557 CTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 21498 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || |||||| ||| ||| || |||| ||| Sbjct 21497 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGA-CGT 21439 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || || | || ||||| || ||||| || ||||| | Sbjct 21438 TGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGA 21379 Query 42196 CAAA 42199 | || Sbjct 21378 CGAA 21375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543208427136960