Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq46 125 7e-24
seq13 102 8e-17
seq157 86.0 6e-12
>seq46
Length=146035
Score = 125 bits (138), Expect = 7e-24
Identities = 339/516 (66%), Gaps = 17/516 (3%)
Strand=Plus/Minus
Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CC 52385
|| ||| ||||| ||||| | ||||| |||||||||| | ||||| | ||
Sbjct 142017 CCCTGCATTCGCCGCAAGGCCGATTGGGCCCTGAAGTGGATTGC---CGACAAGGAATCC 141961
Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445
|| | || ||||| | || || || || |||||||| | || || ||||| |
Sbjct 141960 ACCTTTGCTCAGCGCCTCGTTGCTTTTGCGGCCGTCGAGGGTATCTTCTTCTCCGGTGCC 141901
Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505
|||||| ||||||| | | | | || | ||||| |||||||| || |||
Sbjct 141900 TTTGCCTCCATCTTCTGGTTGCGCAAGCGTGGTCTCATGCCTGGCCTGACTTTTTCCAAT 141841
Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACG 52565
||| |||| || || ||||| || || ||||| |||||||| ||||||| ||| |
Sbjct 141840 GAGCTGATTTCTCGTGACGAGGGTCTTCACACCGACTTTGCCTGCCTCTTGTACT---CT 141784
Query 52566 CGCGTGACCGAAAAATTGGATTCGGACAC----GATCCTGAGCATGTTCAAGGAGGCGGT 52621
| | | | | || | | | | | ||||| | || ||| || || ||
Sbjct 141783 CACCTCAAC----AACCGCCCTAGCAAGCAACTGATCCAGGAAATCATCACCGATGCTGT 141728
Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681
||||| || |||||||| |||| | || ||||| | || || || ||||||||
Sbjct 141727 CGCTATTGAGAAGGAGTTCCTTACCGAGGCCCTGCCCTGTGCCCTTCTCGGTATGAACGC 141668
Query 52682 GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA 52741
| |||| |||||||||||| || || || ||||| | || || || |
Sbjct 141667 TGACCTCATGAAGACGTACATCGAGTTCGTTGCCGACCGTCTTCTCGTTGCCCTTGGTAA 141608
Query 52742 GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGG 52801
||| || ||| ||| ||| || || || || ||| | ||||||||||||| ||
Sbjct 141607 CGAGAAGGTCTACAAGGCTTCCAACCCCTTCGACTTCATGGAGAACATTTCGCTTGGTGG 141548
Query 52802 CAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||||||||||| ||||||||||| || || || ||
Sbjct 141547 CAAGACCAACTTCTTCGAGAAGCGCGTTGGTGATTA 141512
>seq13
Length=240985
Score = 102 bits (112), Expect = 8e-17
Identities = 141/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||| || |||||||| ||| | ||||| ||||| || || || |||| |
Sbjct 38156 GATTCCTTCTGGATGTTGTAATCGGAAAGGGTACGGCCATCCTCAAGCTGCTTGCCGGCA 38097
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| || ||||| ||||||||||| || || || ||||| ||| || || | |
Sbjct 38096 AAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 38037
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||||||| ||||| ||||| | || | || || ||||||||||| ||
Sbjct 38036 TTG-TCGATAGTGTCGGAAGACTCAACCTCCAAGGTAATGGTCTTTCCAGTCAGAGTCTT 37978
Query 138600 TACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 37977 GACGAAAATCTGCAT 37963
Score = 89.7 bits (98), Expect = 5e-13
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || || | ||| | ||| || || | | || ||||| |||||||||||||||
Sbjct 38646 GCCACCACGGAGACGAAGAACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGA 38587
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| ||| || ||||| || || || || | | |||| || ||||| |||||||| ||
Sbjct 38586 CAGAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGG 38527
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564
|| || || ||||| ||| | || | || |||| || | ||| || | |||||
Sbjct 38526 AATGCCCTCCTTGTC-CTGAATCTTGGACTTGACATTG-TCAATGGTATCAGAAGACTCA 38469
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| || | || | || || ||||| || || || || |||||||||||
Sbjct 38468 ACTTCAAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 38419
Score = 87.8 bits (96), Expect = 2e-12
Identities = 139/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | |||||| ||||| || || ||||| |
Sbjct 38384 GACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGTCCATCCTCAAGCTGCTTACCAGCG 38325
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
| || ||||||||||| ||||| || || || || ||||| ||| | || | || |
Sbjct 38324 AAAATGAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTC-CTGAATCTTCGACTTCAC 38266
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | ||| || | ||||| ||||| | || | || |||||||| || || |
Sbjct 38265 GTTG-TCAATGGTATCAGAAGACTCGACCTCCAAGGTAATAGTCTTACCAGTGAGGGTCT 38207
Query 138599 TTACAAAAATCTGCAT 138614
| || || ||||||||
Sbjct 38206 TGACGAAGATCTGCAT 38191
Score = 82.4 bits (90), Expect = 8e-11
Identities = 112/153 (73%), Gaps = 4/153 (3%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||||||| || ||| || ||||| || || || || | |
Sbjct 37928 GACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCAAGCTGCTTTCCAGCA 37869
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
| || || ||||| ||||||||||| || || || ||||| ||| | || | || |
Sbjct 37868 AATATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTGAC 37810
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGA 138571
||| || | ||||||| ||||| |||||||
Sbjct 37809 GTTG-TCGATAGTGTCGGAGGACTCAACCTCGA 37778
>seq157
Length=65766
Score = 86.0 bits (94), Expect = 6e-12
Identities = 135/191 (71%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484
|||| |||||||||||||| | || || ||||| || || || || | | |||
Sbjct 45140 CCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 45081
Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543
| |||||||| || ||||| || || || || || || ||| || || | |||||
Sbjct 45080 TCAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 45021
Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603
| | |||||| | ||||| ||||||| || | ||| ||||| || || || || ||
Sbjct 45020 -CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTAACG 44962
Query 138604 AAAATCTGCAT 138614
|||||||||||
Sbjct 44961 AAAATCTGCAT 44951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496258405087680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |