Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq46 125 7e-24 seq13 102 8e-17 seq157 86.0 6e-12 >seq46 Length=146035 Score = 125 bits (138), Expect = 7e-24 Identities = 339/516 (66%), Gaps = 17/516 (3%) Strand=Plus/Minus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CC 52385 || ||| ||||| ||||| | ||||| |||||||||| | ||||| | || Sbjct 142017 CCCTGCATTCGCCGCAAGGCCGATTGGGCCCTGAAGTGGATTGC---CGACAAGGAATCC 141961 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || | || ||||| | || || || || |||||||| | || || ||||| | Sbjct 141960 ACCTTTGCTCAGCGCCTCGTTGCTTTTGCGGCCGTCGAGGGTATCTTCTTCTCCGGTGCC 141901 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 |||||| ||||||| | | | | || | ||||| |||||||| || ||| Sbjct 141900 TTTGCCTCCATCTTCTGGTTGCGCAAGCGTGGTCTCATGCCTGGCCTGACTTTTTCCAAT 141841 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACG 52565 ||| |||| || || ||||| || || ||||| |||||||| ||||||| ||| | Sbjct 141840 GAGCTGATTTCTCGTGACGAGGGTCTTCACACCGACTTTGCCTGCCTCTTGTACT---CT 141784 Query 52566 CGCGTGACCGAAAAATTGGATTCGGACAC----GATCCTGAGCATGTTCAAGGAGGCGGT 52621 | | | | | || | | | | | ||||| | || ||| || || || Sbjct 141783 CACCTCAAC----AACCGCCCTAGCAAGCAACTGATCCAGGAAATCATCACCGATGCTGT 141728 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681 ||||| || |||||||| |||| | || ||||| | || || || |||||||| Sbjct 141727 CGCTATTGAGAAGGAGTTCCTTACCGAGGCCCTGCCCTGTGCCCTTCTCGGTATGAACGC 141668 Query 52682 GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA 52741 | |||| |||||||||||| || || || ||||| | || || || | Sbjct 141667 TGACCTCATGAAGACGTACATCGAGTTCGTTGCCGACCGTCTTCTCGTTGCCCTTGGTAA 141608 Query 52742 GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGG 52801 ||| || ||| ||| ||| || || || || ||| | ||||||||||||| || Sbjct 141607 CGAGAAGGTCTACAAGGCTTCCAACCCCTTCGACTTCATGGAGAACATTTCGCTTGGTGG 141548 Query 52802 CAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||| ||||||||||| || || || || Sbjct 141547 CAAGACCAACTTCTTCGAGAAGCGCGTTGGTGATTA 141512 >seq13 Length=240985 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||| ||| | ||||| ||||| || || || |||| | Sbjct 38156 GATTCCTTCTGGATGTTGTAATCGGAAAGGGTACGGCCATCCTCAAGCTGCTTGCCGGCA 38097 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||||||||| || || || ||||| ||| || || | | Sbjct 38096 AAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 38037 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||||| ||||| ||||| | || | || || ||||||||||| || Sbjct 38036 TTG-TCGATAGTGTCGGAAGACTCAACCTCCAAGGTAATGGTCTTTCCAGTCAGAGTCTT 37978 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 37977 GACGAAAATCTGCAT 37963 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| || || | | || ||||| ||||||||||||||| Sbjct 38646 GCCACCACGGAGACGAAGAACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGA 38587 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || ||||| || || || || | | |||| || ||||| |||||||| || Sbjct 38586 CAGAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGG 38527 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| ||| | || | || |||| || | ||| || | ||||| Sbjct 38526 AATGCCCTCCTTGTC-CTGAATCTTGGACTTGACATTG-TCAATGGTATCAGAAGACTCA 38469 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | || || ||||| || || || || ||||||||||| Sbjct 38468 ACTTCAAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 38419 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | |||||| ||||| || || ||||| | Sbjct 38384 GACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGTCCATCCTCAAGCTGCTTACCAGCG 38325 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || ||||||||||| ||||| || || || || ||||| ||| | || | || | Sbjct 38324 AAAATGAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTC-CTGAATCTTCGACTTCAC 38266 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||| || | ||||| ||||| | || | || |||||||| || || | Sbjct 38265 GTTG-TCAATGGTATCAGAAGACTCGACCTCCAAGGTAATAGTCTTACCAGTGAGGGTCT 38207 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 38206 TGACGAAGATCTGCAT 38191 Score = 82.4 bits (90), Expect = 8e-11 Identities = 112/153 (73%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| || ||| || ||||| || || || || | | Sbjct 37928 GACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCAAGCTGCTTTCCAGCA 37869 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || || ||||| ||||||||||| || || || ||||| ||| | || | || | Sbjct 37868 AATATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTGAC 37810 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGA 138571 ||| || | ||||||| ||||| ||||||| Sbjct 37809 GTTG-TCGATAGTGTCGGAGGACTCAACCTCGA 37778 >seq157 Length=65766 Score = 86.0 bits (94), Expect = 6e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| |||||||||||||| | || || ||||| || || || || | | ||| Sbjct 45140 CCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 45081 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | |||||||| || ||||| || || || || || || ||| || || | ||||| Sbjct 45080 TCAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 45021 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 | | |||||| | ||||| ||||||| || | ||| ||||| || || || || || Sbjct 45020 -CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTAACG 44962 Query 138604 AAAATCTGCAT 138614 ||||||||||| Sbjct 44961 AAAATCTGCAT 44951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496258405087680