Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq13 107 2e-18
seq157 105 6e-18
seq3 105 6e-18
>seq13
Length=240985
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || || || || ||||| ||||| ||| |
Sbjct 38645 CCACCACGGAGACGAAGAACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAC 38586
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| ||| || ||||| |||||||| |||||| |||||||| || || ||
Sbjct 38585 AGAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 38526
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| || || ||||| | || | ||| || | | ||| |||
Sbjct 38525 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTATCAGAAGACTCAACT 38466
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || || || || || || || || |||||||||||
Sbjct 38465 TCAAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 38419
Score = 104 bits (114), Expect = 2e-17
Identities = 129/174 (74%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| ||||| ||| || |||||| ||| || ||||| ||||||
Sbjct 37931 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCAAGCTGCTTTCCA 37872
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| | |||| |||||||| || ||||| ||||||||||||||| || || ||||
Sbjct 37871 GCAAATATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 37812
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
| |||| |||| ||||| | ||| || |||| ||| | || ||||||||
Sbjct 37811 ACGTTG-TCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 37759
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| || || || || || ||||||||| | || || ||| || ||||| || ||
Sbjct 38159 GTGGATTCCTTCTGGATGTTGTAATCGGAAAGGGTACGGCCATCCTCAAGCTGCTTGCCG 38100
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||||| |||||||| || ||||| ||||||||||||||| ||| || ||||
Sbjct 38099 GCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 38040
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||||| | | ||| || || | ||| | || || || ||||||||
Sbjct 38039 ACATTGTCGATAGTGTCGGAAGACTCAACCTCCAAGGTAATGGTCTTTCCAGTCAGAGTC 37980
Query 127097 TTTACAAAAATCTGCAT 127113
|| || |||||||||||
Sbjct 37979 TTGACGAAAATCTGCAT 37963
>seq157
Length=65766
Score = 105 bits (116), Expect = 6e-18
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| ||||| ||||| || | ||||| ||| || ||||| || ||||| |||||
Sbjct 45138 TTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 45079
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| ||||||||||| || || ||||||||||| ||| ||| || ||||| | |||
Sbjct 45078 AGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 45019
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| |||||||| ||| || |||| ||| | ||| || || || || || || || |||
Sbjct 45018 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTAACGAAA 44959
Query 127106 ATCTGCAT 127113
||||||||
Sbjct 44958 ATCTGCAT 44951
>seq3
Length=407529
Score = 105 bits (116), Expect = 6e-18
Identities = 146/201 (73%), Gaps = 4/201 (2%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| || | ||||| ||| || ||||| || |||
Sbjct 21562 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCGAGCTGCTTGCCA 21503
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||||| |||||||| || || || ||||||||||| ||| ||| || ||||
Sbjct 21502 GCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTG 21443
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| ||||||| | |||||| || | ||| | || || || ||||| ||
Sbjct 21442 ACGTTG-TCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGT 21384
Query 127096 TTTTACAAAAATCTGCATGGC 127116
|| || ||| |||||||||
Sbjct 21383 CTTGACGAAA--CTGCATGGC 21365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475496972218560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |