Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq13 89.7 5e-13
>seq13
Length=240985
Score = 89.7 bits (98), Expect = 5e-13
Identities = 144/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195
|| || || |||||||| || || || || ||| ||| | | || ||| || | |
Sbjct 38621 TGGAGAGTGGATTCCTTCTGAATGTTGTAGTCG--GACAGAGTGCGACCATCCTCAAGCT 38564
Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255
| ||||| || | |||| || ||||||||||| |||||||| || || || ||||| |
Sbjct 38563 GCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCT 38504
Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315
| |||| || | ||| || |||||||| ||||| ||||||| || || || |
Sbjct 38503 TGGACTTGACATTGTCAATGGTATCAGAAGACTCAACTTCAAGAGTAATGGTCTTTCCAG 38444
Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340
| || || || || ||||| |||||
Sbjct 38443 TGAGGGTCTTGACGAAAATCTGCAT 38419
Score = 86.0 bits (94), Expect = 6e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | || || || || || |||||||| ||||| || ||||||
Sbjct 38192 ATACCACCACGGAGACGAAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCG 38133
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| || | || || || || | |||| || |||||||||||
Sbjct 38132 GAAAGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGA 38073
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|||||||| || || || || || || |||| || | ||||||||||||||
Sbjct 38072 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCA 38013
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || | |||| || || || || ||||| || || ||||| |||||
Sbjct 38012 ACCTCCAAGGTAATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 37963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451999561374240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |