Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq46 152 6e-32
>seq46
Length=146035
Score = 152 bits (168), Expect = 6e-32
Identities = 531/815 (65%), Gaps = 19/815 (2%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
||| || || || ||||||||||||||||| ||||| ||| | || || ||||||||
Sbjct 141511 GTAATCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAAATGTTCTCCAT 141570
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348
|| || || ||||| | || | | || | | ||| || ||| |||
Sbjct 141571 GAAGTCGAAGGGGTTGGAAGCCTTGTAGACCTTCTCGTTACC--AAGGGCAACGAGAAGA 141628
Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408
|| || | ||| |||| |||||| ||| |||| ||||||||||| ||| |
Sbjct 141629 CGGTCGGCAACGAACTCGATGTACGTCTTCATGAGGTCAGCGTTCATACCGAGAAGGGCA 141688
Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468
|| || || || || | |||| |||||||||| | ||||| || | ||| |
Sbjct 141689 CAGGGCAGGGCCTCGGTAAGGAACTCCTTCTCAATAGCGACAGCATCGGTGATGATTTCC 141748
Query 127469 TGAAT-AGTGTCCACCCCAGGTC---TATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAA 127524
|| || ||| | | | ||| | | ||| | || | ||||| || |||||
Sbjct 141749 TGGATCAGT-TGCTTGCTAGGGCGGTTGTTGAGGTGAGAGTACAAGAGG--CAG-GCAAA 141804
Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584
|| ||| |||||||||||||| || || || ||||| || || ||| || |||||
Sbjct 141805 GTCGGTGTGAAGACCCTCGTCACGAGAAATCAGCTCATTGGAAAAAGTCAGGCCAGGCAT 141864
Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644
|||||| ||||| ||||||||| || | ||| | || ||||||||||| |||||
Sbjct 141865 GAGACCACGCTTGCGCAACCAGAAGATGGAGGCAAAGGCACCGGAGAAGAAGATACCCTC 141924
Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCACT 127703
|| ||| || |||| || |||| ||||||| | | | |||| ||| |||||
Sbjct 141925 GACGGCCGCAAAAGCAACGAGGCGCTGAGCAAAGGTG-GATTCCTTGTCGGCAATCCACT 141983
Query 127704 TCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTT 127763
||| ||||| | ||||| || || || | ||| | || || | |||||| |
Sbjct 141984 TCAGGGCCCAATCGGCCTTGCGGCGAATGCAGGGAATGGTGTCAATGGCGTTAAAGAGAT 142043
Query 127764 CCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGT 127823
| | | || || |||||||| |||| || || || || || || ||
Sbjct 142044 AAGTGCGCTGGGCGGGCTCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGTCTCAGAGT 142103
Query 127824 GGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACC 127882
| | | | ||| || | ||| | ||||||| |||| || ||| | ||| |||
Sbjct 142104 GAATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAACCTGAACC 142162
Query 127883 TCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAAC 127942
||| ||| ||| | | | ||||| ||||| ||||| || ||||||| ||
Sbjct 142163 TCAGCGGAAAAGCGCTCAACAAGGTTCTCGTTCACAATGCCATCAGAAGCAGCAAAGAAA 142222
Query 127943 GCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCG 127999
|| || || | || || ||| |||| || ||||| || | ||||||||||
Sbjct 142223 GCGAGAATGTGAGAGATAAAGAACTGCTCATCCTTGTTCATGCGGTTGTTCCAGTCGTGA 142282
Query 128000 AGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034
|||||||| || ||||| | |||||| ||||||||
Sbjct 142283 AGATCCTTAGACAGATCAATCTCCTCAGCAGTCCA 142317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613502261267040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |