Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq46 219 4e-52 seq13 100 3e-16 seq3 96.9 3e-15 seq157 91.5 1e-13 >seq46 Length=146035 Score = 219 bits (242), Expect = 4e-52 Identities = 593/896 (66%), Gaps = 21/896 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAGCGTCATAAAATCCAAGGGGTT 132683 ||||| || || || || || || ||||| |||||| | ||| || || |||||||| Sbjct 141527 TTCTCGAAGAAGTTGGTCTTGCCA-CCAAGCGAAATGTTCTCCATGAAGTCGAAGGGGTT 141585 Query 132684 GGCTGTGTTGTAGTGCTTG--GTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 || | |||||| ||| || | | ||| | ||||| || | |||||| |||||| Sbjct 141586 GGAAGCCTTGTAGACCTTCTCGTTACCA--AGGGCAACGAGAAGACGGTCGGCAACGAAC 141643 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGG-CAGCGCTTC 132800 |||||||| | |||| || || | || || || |||| || ||| || || Sbjct 141644 TCGATGTACGTCTTCATGAGGTCAGCGTTCATACCGAGAAGG-GCACAGGGCAGGGCCTC 141702 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 ||| || || | ||| || ||||| || ||||||| ||||||| | | | Sbjct 141703 GGTAAGGAACTCCTTCTCAATAGCGACAGCATCGGTGATGATTTCCTGGATCAGTTGCTT 141762 Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 ||| || || | | || | ||| | ||| ||||||||| || | ||||| Sbjct 141763 GCTAGGGCGGTTGTTGAGGTGAGAGTACAAGAGGCAGGCAAAGTCGGTGTGAAGACCCTC 141822 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 ||| | ||||| || || ||| ||||||| ||| |||||||| || || || | Sbjct 141823 GTCACGAGAAATCAGCTCATTGGAAAAAGTCAGGCCAGGCATGAGACCACGCTTGCGCAA 141882 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || |||| ||| || || || ||||||| |||||||||||||| ||||| || Sbjct 141883 CCAGAAGATGGAGGCAAAGGCACCGGAGAAGAAGATACCCTCGACGGCCGCAAAAGCAAC 141942 Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 ||||||| | || |||| ||| ||| ||| ||||| ||| ||||| |||||||| Sbjct 141943 GAGGCGCTGAGCAAAGGTGGATTCCTTGTCGGCAATCCACTTCAGGGCCCAATCGGCCTT 142002 Query 133101 TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGA 133160 | ||| || || || || |||||||| || | | | | | || || Sbjct 142003 GCGGCGAATGCAGGGAATGGTGTCAATGGCGTTAAAGAGA--TAAGTGCGCTGGGCGGGC 142060 Query 133161 AC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCG 133218 | | ||| || || || || || || | || ||||| | ||||||||| | Sbjct 142061 TCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGTCTCAGAGTGAATGTTCTCCATCATG 142120 Query 133219 ATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCG---AAACGC 133275 || || || ||||| ||||| || |||||| ||||| || || |||| || ||| Sbjct 142121 ATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAACCTGAACCTC---AGCGGAAAAGCGC 142177 Query 133276 TCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTG 133335 || || || || ||||| || ||||| || || || || || || || | ||| | Sbjct 142178 TCAACAAGGTTCTCGTTCACAATGCCATCAGAAGCAGCAAAGAAAGCGAGAATGTGAGAG 142237 Query 133336 ATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGG 133392 || || |||| | | ||||| ||| | ||||||| | ||||| ||||| Sbjct 142238 ATAAAGAACTGCTCATCCTTGTTCATGCGGTTGTTCCAGTCGTGAAGATCCTTAGACAGA 142297 Query 133393 TCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCC 133452 || | |||||| | ||||| ||||| |||||||| || |||||||| ||| || || Sbjct 142298 TCAATCTCCTCAGCAGTCCAGAACGAAGCCTCGGCCTTCTTGTACATCTGCCAAATCTCA 142357 Query 133453 GAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 || | ||||| |||| ||| || ||| ||||| || ||| ||| ||||| Sbjct 142358 TGGTACTTGATGGGGAAAAGCACGAAGCGGTTAGGGTTCTCCTGCAGCAGAGGCTC 142413 >seq13 Length=240985 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || || || ||| | || |||||| | | Sbjct 38191 ATGCAGATCTTCGTCAAGACCCTCACTGGTAAGACTATTACCTTGGAGGTCGAGTCTTCT 38250 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || || | ||||| ||||| |||||| | || || Sbjct 38251 GATACCATTGACAACG-TGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 38309 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||||| ||| || || ||||| || || | || || ||| |||||||| Sbjct 38310 ACAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGACGTACTCTCTCTGACTACAA 38369 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || |||| |||| || ||| Sbjct 38370 CATCCAGAAGGAGTCCACTTTGCACCTGGTTCTTCGT 38406 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||| || | || || ||| | | Sbjct 38419 ATGCAGATTTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTTGAAGTTGAGTCTTCT 38478 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || || | ||||| ||||| |||||| | ||||| Sbjct 38479 GATACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 38538 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || ||||| || || | ||||| || |||||||||| Sbjct 38539 CAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTCTGTCCGACTACAAC 38598 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 || || |||||| | || || || ||||| || ||| | | || |||| Sbjct 38599 ATTCAGAAGGAATCCACTCTCCACTTGGTTCTTCGTCTCCGTGGTGGCC 38647 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||||||| |||| || ||| || |||||| | | |||| | || Sbjct 37757 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAACG-TCAAG 37815 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || || | ||||| ||||| ||||| | ||||| ||||| || || | || || Sbjct 37816 TCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGCCTGATATTTGCTGGA 37875 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || || | ||||| || |||||||||||| || ||||| | || || Sbjct 37876 AAGCAGCTTGAGGATGGTCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCCACTCTC 37935 Query 38445 CATTTGGTGCTGCGT 38459 || |||| || ||| Sbjct 37936 CACCTGGTCCTCCGT 37950 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||| ||| | || || ||| | || Sbjct 37963 ATGCAGATTTTCGTCAAGACTCTGACTGGAAAGACCATTACCTTGGAGGTTGAGTCTTCC 38022 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || |||| ||||| ||||| ||||| | ||||| Sbjct 38023 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 38082 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| ||||| || || | || ||||| ||| |||||| Sbjct 38083 CAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTTCCGATTACAAC 38142 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || || | || || ||| Sbjct 38143 ATCCAGAAGGAATCCACTCTCCACCTTGTCCTTCGT 38178 >seq3 Length=407529 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| | | |||| | Sbjct 21375 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATC 21434 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || || |||| || || ||||| |||||| | ||||| ||||| || Sbjct 21435 GACAACG-TCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 21493 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| ||||| ||||| || || | ||||| ||| |||||||||||||| || Sbjct 21494 GATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCTGACTACAACATCCAGAA 21553 Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| | || || || |||| || || Sbjct 21554 GGAGTCCACTCTCCACCTGGTCCTCCG 21580 >seq157 Length=65766 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || ||||| || || || ||| |||| || ||| || Sbjct 44948 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 45007 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || || |||| || || ||||| |||||| | || Sbjct 45008 TCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGAT 45067 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | || ||||| |||||||| || | |||||||| |||||| Sbjct 45068 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTAC 45127 Query 38421 AACATCCAAAAGG 38433 ||||| || |||| Sbjct 45128 AACATTCAGAAGG 45140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500168773608960