Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq46 219 4e-52
seq13 100 3e-16
seq3 96.9 3e-15
seq157 91.5 1e-13
>seq46
Length=146035
Score = 219 bits (242), Expect = 4e-52
Identities = 593/896 (66%), Gaps = 21/896 (2%)
Strand=Plus/Plus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAGCGTCATAAAATCCAAGGGGTT 132683
||||| || || || || || || ||||| |||||| | ||| || || ||||||||
Sbjct 141527 TTCTCGAAGAAGTTGGTCTTGCCA-CCAAGCGAAATGTTCTCCATGAAGTCGAAGGGGTT 141585
Query 132684 GGCTGTGTTGTAGTGCTTG--GTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
|| | |||||| ||| || | | ||| | ||||| || | |||||| ||||||
Sbjct 141586 GGAAGCCTTGTAGACCTTCTCGTTACCA--AGGGCAACGAGAAGACGGTCGGCAACGAAC 141643
Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGG-CAGCGCTTC 132800
|||||||| | |||| || || | || || || |||| || ||| || ||
Sbjct 141644 TCGATGTACGTCTTCATGAGGTCAGCGTTCATACCGAGAAGG-GCACAGGGCAGGGCCTC 141702
Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860
||| || || | ||| || ||||| || ||||||| ||||||| | | |
Sbjct 141703 GGTAAGGAACTCCTTCTCAATAGCGACAGCATCGGTGATGATTTCCTGGATCAGTTGCTT 141762
Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920
||| || || | | || | ||| | ||| ||||||||| || | |||||
Sbjct 141763 GCTAGGGCGGTTGTTGAGGTGAGAGTACAAGAGGCAGGCAAAGTCGGTGTGAAGACCCTC 141822
Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980
||| | ||||| || || ||| ||||||| ||| |||||||| || || || |
Sbjct 141823 GTCACGAGAAATCAGCTCATTGGAAAAAGTCAGGCCAGGCATGAGACCACGCTTGCGCAA 141882
Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040
||| || |||| ||| || || || ||||||| |||||||||||||| ||||| ||
Sbjct 141883 CCAGAAGATGGAGGCAAAGGCACCGGAGAAGAAGATACCCTCGACGGCCGCAAAAGCAAC 141942
Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100
||||||| | || |||| ||| ||| ||| ||||| ||| ||||| ||||||||
Sbjct 141943 GAGGCGCTGAGCAAAGGTGGATTCCTTGTCGGCAATCCACTTCAGGGCCCAATCGGCCTT 142002
Query 133101 TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGA 133160
| ||| || || || || |||||||| || | | | | | || ||
Sbjct 142003 GCGGCGAATGCAGGGAATGGTGTCAATGGCGTTAAAGAGA--TAAGTGCGCTGGGCGGGC 142060
Query 133161 AC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCG 133218
| | ||| || || || || || || | || ||||| | ||||||||| |
Sbjct 142061 TCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGTCTCAGAGTGAATGTTCTCCATCATG 142120
Query 133219 ATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCG---AAACGC 133275
|| || || ||||| ||||| || |||||| ||||| || || |||| || |||
Sbjct 142121 ATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAACCTGAACCTC---AGCGGAAAAGCGC 142177
Query 133276 TCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTG 133335
|| || || || ||||| || ||||| || || || || || || || | ||| |
Sbjct 142178 TCAACAAGGTTCTCGTTCACAATGCCATCAGAAGCAGCAAAGAAAGCGAGAATGTGAGAG 142237
Query 133336 ATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGG 133392
|| || |||| | | ||||| ||| | ||||||| | ||||| |||||
Sbjct 142238 ATAAAGAACTGCTCATCCTTGTTCATGCGGTTGTTCCAGTCGTGAAGATCCTTAGACAGA 142297
Query 133393 TCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCC 133452
|| | |||||| | ||||| ||||| |||||||| || |||||||| ||| || ||
Sbjct 142298 TCAATCTCCTCAGCAGTCCAGAACGAAGCCTCGGCCTTCTTGTACATCTGCCAAATCTCA 142357
Query 133453 GAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508
|| | ||||| |||| ||| || ||| ||||| || ||| ||| |||||
Sbjct 142358 TGGTACTTGATGGGGAAAAGCACGAAGCGGTTAGGGTTCTCCTGCAGCAGAGGCTC 142413
>seq13
Length=240985
Score = 100 bits (110), Expect = 3e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| || || || || ||| | || |||||| | |
Sbjct 38191 ATGCAGATCTTCGTCAAGACCCTCACTGGTAAGACTATTACCTTGGAGGTCGAGTCTTCT 38250
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || || || | ||||| ||||| |||||| | || ||
Sbjct 38251 GATACCATTGACAACG-TGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 38309
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| ||||||| ||| || || ||||| || || | || || ||| ||||||||
Sbjct 38310 ACAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGACGTACTCTCTCTGACTACAA 38369
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||| ||||| | || |||| |||| || |||
Sbjct 38370 CATCCAGAAGGAGTCCACTTTGCACCTGGTTCTTCGT 38406
Score = 89.7 bits (98), Expect = 5e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| || || ||||| || | || || ||| | |
Sbjct 38419 ATGCAGATTTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTTGAAGTTGAGTCTTCT 38478
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || || || | ||||| ||||| |||||| | |||||
Sbjct 38479 GATACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 38538
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || || || ||||| || || | ||||| || ||||||||||
Sbjct 38539 CAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTCTGTCCGACTACAAC 38598
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
|| || |||||| | || || || ||||| || ||| | | || ||||
Sbjct 38599 ATTCAGAAGGAATCCACTCTCCACTTGGTTCTTCGTCTCCGTGGTGGCC 38647
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||||||| |||| || ||| || |||||| | | |||| | ||
Sbjct 37757 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAACG-TCAAG 37815
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
|| || | ||||| ||||| ||||| | ||||| ||||| || || | || ||
Sbjct 37816 TCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGCCTGATATTTGCTGGA 37875
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
|| ||||| || || | ||||| || |||||||||||| || ||||| | || ||
Sbjct 37876 AAGCAGCTTGAGGATGGTCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCCACTCTC 37935
Query 38445 CATTTGGTGCTGCGT 38459
|| |||| || |||
Sbjct 37936 CACCTGGTCCTCCGT 37950
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || || || ||||| ||| | || || ||| | ||
Sbjct 37963 ATGCAGATTTTCGTCAAGACTCTGACTGGAAAGACCATTACCTTGGAGGTTGAGTCTTCC 38022
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | || || |||| ||||| ||||| ||||| | |||||
Sbjct 38023 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 38082
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || ||||| ||||| || || | || ||||| ||| ||||||
Sbjct 38083 CAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTTCCGATTACAAC 38142
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| |||||| | || || || | || || |||
Sbjct 38143 ATCCAGAAGGAATCCACTCTCCACCTTGTCCTTCGT 38178
>seq3
Length=407529
Score = 96.9 bits (106), Expect = 3e-15
Identities = 147/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || ||||| || ||||| ||| | || |||||| | | |||| |
Sbjct 21375 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATC 21434
Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371
| |||| | || || |||| || || ||||| |||||| | ||||| ||||| ||
Sbjct 21435 GACAACG-TCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 21493
Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431
|| | ||| ||||| ||||| || || | ||||| ||| |||||||||||||| ||
Sbjct 21494 GATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCTGACTACAACATCCAGAA 21553
Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCG 38458
||| | || || || |||| || ||
Sbjct 21554 GGAGTCCACTCTCCACCTGGTCCTCCG 21580
>seq157
Length=65766
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || || ||||| || || || ||| |||| || ||| ||
Sbjct 44948 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 45007
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | | || || |||| || || ||||| |||||| | ||
Sbjct 45008 TCGGACACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGAT 45067
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || || | || ||||| |||||||| || | |||||||| ||||||
Sbjct 45068 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTAC 45127
Query 38421 AACATCCAAAAGG 38433
||||| || ||||
Sbjct 45128 AACATTCAGAAGG 45140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500168773608960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |