Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq13 152 1e-31
seq3 145 2e-29
seq157 109 1e-18
>seq13
Length=240985
Score = 152 bits (168), Expect = 1e-31
Identities = 159/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| |||||||| || || || || |||||||||| ||| || | ||||| ||
Sbjct 38171 ACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGGGTACGGCCATCCTCA 38112
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || || || ||||| ||||||||||| || ||||| ||
Sbjct 38111 AGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 38052
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || || ||||| ||| || || || | ||||| ||||||
Sbjct 38051 ATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCCAAGGTAATGGTCTTT 37992
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||| ||| || ||||| | |||||
Sbjct 37991 CCAGTCAGAGTCTTGACGAAAATCTGCAT 37963
Score = 136 bits (150), Expect = 9e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| ||||| | ||||||||| || || || ||||| || | ||||| | ||||| ||
Sbjct 38400 AACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGTCCATCCTC 38341
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||||||||| ||||| || || || ||||| || || |||||||| || ||||| ||
Sbjct 38340 AAGCTGCTTACCAGCGAAAATGAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTG 38281
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| ||||| |||||||| || ||| || || || | ||||| |||||
Sbjct 38280 AATCTTCGACTTCACGTTGTCAATGGTATCAGAAGACTCGACCTCCAAGGTAATAGTCTT 38221
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 38220 ACCAGTGAGGGTCTTGACGAAGATCTGCAT 38191
Score = 131 bits (144), Expect = 4e-25
Identities = 140/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||||||||| || ||||| ||||| |||| ||||| | ||||| ||
Sbjct 37943 ACCAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCA 37884
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || || || || || || ||||| ||||||||||| || ||||| |||
Sbjct 37883 AGCTGCTTTCCAGCAAATATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 37824
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || || ||||| || || || || ||||| | |||||
Sbjct 37823 ATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTG 37764
Query 195112 CCTGT 195116
|| ||
Sbjct 37763 CCGGT 37759
>seq3
Length=407529
Score = 145 bits (160), Expect = 2e-29
Identities = 152/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||||||||| || || || ||||| || | ||||| | ||||| |||
Sbjct 21574 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCCTCG 21515
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || |||||||| || || || ||
Sbjct 21514 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGG 21455
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || || ||||||||| || || || ||||||| |||||
Sbjct 21454 ATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTA 21395
Query 195112 CCTGTCAAAGTTTTTACGAA 195131
|| |||| || || |||||
Sbjct 21394 CCCGTCAGGGTCTTGACGAA 21375
>seq157
Length=65766
Score = 109 bits (120), Expect = 1e-18
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| ||||| ||||| || | ||| || | ||||| || |||||||| || || |||||
Sbjct 45138 TTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 45079
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
|| || || || || || |||||||| || || || || || || |||||| || ||
Sbjct 45078 AGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 45019
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132
||||||||||| || || || ||||||| |||||| || || | || || |||||
Sbjct 45018 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTAACGAAA 44959
Query 195133 ACTTGCAT 195140
| |||||
Sbjct 44958 ATCTGCAT 44951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109472445389948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |