Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq13 114 8e-21
seq157 98.7 6e-16
>seq13
Length=240985
Score = 114 bits (126), Expect = 8e-21
Identities = 152/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||| | ||| ||| ||||||||||| ||||| || || | || |||| ||
Sbjct 38628 AACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTC 38569
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| ||||| ||||| || || || |||||||| | || | |||||||||||
Sbjct 38568 AAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 38509
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
|||||| ||||| | || | ||| | |||||| || | || ||||| ||
Sbjct 38508 AATCTTGGACTTGACATTGTCAATGGTATCAGAAGACTCAACTTCAAGAGTAATGGTCTT 38449
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||| ||||| ||||| || || |||||||||
Sbjct 38448 TCCAGTGAGGGTCTTGACGAAAATCTGCATA 38418
Score = 102 bits (112), Expect = 5e-17
Identities = 142/197 (72%), Gaps = 8/197 (4%)
Strand=Plus/Minus
Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849
||| ||||| ||||| || || |||||| | || |||| || ||||| || ||||||||
Sbjct 38154 TTCCTTCTGGATGTTGTAATCGGAAAGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAA 38095
Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909
|| || || |||||||| | || | ||||||||||| ||||| ||||| |
Sbjct 38094 GATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--A 38037
Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965
| | ||||| || | |||||| || | ||| ||||| ||||| || |||||||
Sbjct 38036 T--TGTCGATAGTGTCGGAAGACTCAACCTCCAAGGTAATGGTCTTTCCAGTCAGAGTCT 37979
Query 34966 TCACAAAGATCTGCATA 34982
| || || |||||||||
Sbjct 37978 TGACGAAAATCTGCATA 37962
Score = 95.1 bits (104), Expect = 8e-15
Identities = 133/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||||||||| ||||| || || | || |||| ||
Sbjct 37943 ACCAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCA 37884
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| ||||| |||||||| || || |||||||| | || | ||||||||||| |
Sbjct 37883 AGCTGCTTTCCAGCAAATATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 37824
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | || || |||||| |||| ||| ||||| ||
Sbjct 37823 ATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTG 37764
Query 34953 CCCGTGA 34959
|| ||||
Sbjct 37763 CCGGTGA 37757
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||| ||| | ||| || ||||| ||||| ||||| || || | ||| |||| ||
Sbjct 38400 AACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGTCCATCCTC 38341
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| || || || || || || || || || || | || | |||||||||||
Sbjct 38340 AAGCTGCTTACCAGCGAAAATGAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTG 38281
Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
||||||| || ||| | || | ||| | ||| || || | ||| || || ||
Sbjct 38280 AATCTTCGACTTCACGTTGTCAATGGTATCAGAAGACTCGACCTCCAAGGTAATAGTCTT 38221
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| ||||| ||||| || ||||||||||||
Sbjct 38220 ACCAGTGAGGGTCTTGACGAAGATCTGCATA 38190
>seq157
Length=65766
Score = 98.7 bits (108), Expect = 6e-16
Identities = 140/195 (72%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||||||||| ||||| |||||| | || |||| |||||||| || || ||||| ||
Sbjct 45138 TTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 45079
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
|| || ||||| || | || | |||||||| || ||||| ||||| || |
Sbjct 45078 AGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGAC--AT--T 45023
Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
||||| || || |||||| |||| ||| || || || ||||| || ||||| ||
Sbjct 45022 GTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTAAC 44963
Query 34970 AAAGATCTGCATATT 34984
|| |||||||| ||
Sbjct 44962 GAAAATCTGCATCTT 44948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324631052032032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |