Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq13 114 8e-21 seq157 98.7 6e-16 >seq13 Length=240985 Score = 114 bits (126), Expect = 8e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| ||| ||||||||||| ||||| || || | || |||| || Sbjct 38628 AACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTC 38569 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||| ||||| || || || |||||||| | || | ||||||||||| Sbjct 38568 AAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 38509 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| ||||| | || | ||| | |||||| || | || ||||| || Sbjct 38508 AATCTTGGACTTGACATTGTCAATGGTATCAGAAGACTCAACTTCAAGAGTAATGGTCTT 38449 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| ||||| ||||| || || ||||||||| Sbjct 38448 TCCAGTGAGGGTCTTGACGAAAATCTGCATA 38418 Score = 102 bits (112), Expect = 5e-17 Identities = 142/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| || || |||||| | || |||| || ||||| || |||||||| Sbjct 38154 TTCCTTCTGGATGTTGTAATCGGAAAGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAA 38095 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | ||||||||||| ||||| ||||| | Sbjct 38094 GATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--A 38037 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| || | |||||| || | ||| ||||| ||||| || ||||||| Sbjct 38036 T--TGTCGATAGTGTCGGAAGACTCAACCTCCAAGGTAATGGTCTTTCCAGTCAGAGTCT 37979 Query 34966 TCACAAAGATCTGCATA 34982 | || || ||||||||| Sbjct 37978 TGACGAAAATCTGCATA 37962 Score = 95.1 bits (104), Expect = 8e-15 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||||||||| ||||| || || | || |||| || Sbjct 37943 ACCAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCA 37884 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| |||||||| || || |||||||| | || | ||||||||||| | Sbjct 37883 AGCTGCTTTCCAGCAAATATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 37824 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || || |||||| |||| ||| ||||| || Sbjct 37823 ATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTG 37764 Query 34953 CCCGTGA 34959 || |||| Sbjct 37763 CCGGTGA 37757 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||| | ||| || ||||| ||||| ||||| || || | ||| |||| || Sbjct 38400 AACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGTCCATCCTC 38341 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || || || || || || || || || | || | ||||||||||| Sbjct 38340 AAGCTGCTTACCAGCGAAAATGAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTG 38281 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||||| || ||| | || | ||| | ||| || || | ||| || || || Sbjct 38280 AATCTTCGACTTCACGTTGTCAATGGTATCAGAAGACTCGACCTCCAAGGTAATAGTCTT 38221 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| ||||| || |||||||||||| Sbjct 38220 ACCAGTGAGGGTCTTGACGAAGATCTGCATA 38190 >seq157 Length=65766 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||||||||| ||||| |||||| | || |||| |||||||| || || ||||| || Sbjct 45138 TTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 45079 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || ||||| || | || | |||||||| || ||||| ||||| || | Sbjct 45078 AGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGAC--AT--T 45023 Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||| || || |||||| |||| ||| || || || ||||| || ||||| || Sbjct 45022 GTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTAAC 44963 Query 34970 AAAGATCTGCATATT 34984 || |||||||| || Sbjct 44962 GAAAATCTGCATCTT 44948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631052032032