Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq46 113 5e-20 >seq46 Length=146035 Score = 113 bits (124), Expect = 5e-20 Identities = 354/547 (65%), Gaps = 5/547 (1%) Strand=Plus/Plus Query 18976 TGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCT 19035 || || |||||||| | | |||| ||||| ||||| || | |||||||| || || Sbjct 141812 TGAAGACCCTCGTCACGAGAAATCAGCTCATTGGAAAAAGTCAGGCCAGGCATGAGACCA 141871 Query 19036 CttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCT 19095 | || |||||||| || || ||||| | || || ||||| ||||| || || || Sbjct 141872 CGCTTGCGCAACCAGAAGATGGAGGCAAAGGCACCGGAGAAGAAGATACCCTCGACGGCC 141931 Query 19096 GCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCC 19155 ||||||||||| || | | || | | | || || | |||||| ||||| ||| Sbjct 141932 GCAAAAGCAACGAGGCGCTGAGCAAAGGTGGATTCCTTGTCGGCAATCCACTTCAGGGCC 141991 Query 19156 CAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGC 19215 ||||| ||||| | || || || || || || | ||||| ||||| | ||| Sbjct 141992 CAATCGGCCTTGCGGCGAATGCAGGGAATGGTGTCAATGGCGTTAAAGAGATAAGTGCGC 142051 Query 19216 TCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTT 19275 | | | || || | || | ||| |||| | ||| | || || ||||| || Sbjct 142052 TGGGCGGGCTCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGTCTCAGAGTGAATGTTC 142111 Query 19276 TCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAA 19335 || || ||||| || ||||| || || | || || | | ||| || ||| || Sbjct 142112 TCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAACCTGAACCTCAGCGGAA 142171 Query 19336 AATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACA 19395 || | || || | || || || || || |||||| ||| ||||| || || | | Sbjct 142172 AAGCGCTCAACAAGGTTCTCGTTCACAATGCCATCAGAAGCAGCAAAGAAAGCGAGAATG 142231 Query 19396 TGTTTAATAAAATGTTTTTCATCTGAGGTTAATG----TATTCCAATCATTAATATCTTT 19451 || ||||| | ||||| ||| ||| | ||||| || | || ||| || Sbjct 142232 TGAGAGATAAAGAACTGCTCATC-CTTGTTCATGCGGTTGTTCCAGTCGTGAAGATCCTT 142290 Query 19452 AGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCA 19511 ||| | ||| | || ||| | ||||| || |||||||| || || || ||||| | ||| Sbjct 142291 AGACAGATCAATCTCCTCAGCAGTCCAGAACGAAGCCTCGGCCTTCTTGTACATCTGCCA 142350 Query 19512 TATATCA 19518 || ||| Sbjct 142351 AATCTCA 142357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562104275024160