Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq46 113 5e-20
>seq46
Length=146035
Score = 113 bits (124), Expect = 5e-20
Identities = 354/547 (65%), Gaps = 5/547 (1%)
Strand=Plus/Plus
Query 18976 TGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCT 19035
|| || |||||||| | | |||| ||||| ||||| || | |||||||| || ||
Sbjct 141812 TGAAGACCCTCGTCACGAGAAATCAGCTCATTGGAAAAAGTCAGGCCAGGCATGAGACCA 141871
Query 19036 CttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCT 19095
| || |||||||| || || ||||| | || || ||||| ||||| || || ||
Sbjct 141872 CGCTTGCGCAACCAGAAGATGGAGGCAAAGGCACCGGAGAAGAAGATACCCTCGACGGCC 141931
Query 19096 GCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCC 19155
||||||||||| || | | || | | | || || | |||||| ||||| |||
Sbjct 141932 GCAAAAGCAACGAGGCGCTGAGCAAAGGTGGATTCCTTGTCGGCAATCCACTTCAGGGCC 141991
Query 19156 CAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGC 19215
||||| ||||| | || || || || || || | ||||| ||||| | |||
Sbjct 141992 CAATCGGCCTTGCGGCGAATGCAGGGAATGGTGTCAATGGCGTTAAAGAGATAAGTGCGC 142051
Query 19216 TCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTT 19275
| | | || || | || | ||| |||| | ||| | || || ||||| ||
Sbjct 142052 TGGGCGGGCTCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGTCTCAGAGTGAATGTTC 142111
Query 19276 TCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAA 19335
|| || ||||| || ||||| || || | || || | | ||| || ||| ||
Sbjct 142112 TCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAACCTGAACCTCAGCGGAA 142171
Query 19336 AATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACA 19395
|| | || || | || || || || || |||||| ||| ||||| || || | |
Sbjct 142172 AAGCGCTCAACAAGGTTCTCGTTCACAATGCCATCAGAAGCAGCAAAGAAAGCGAGAATG 142231
Query 19396 TGTTTAATAAAATGTTTTTCATCTGAGGTTAATG----TATTCCAATCATTAATATCTTT 19451
|| ||||| | ||||| ||| ||| | ||||| || | || ||| ||
Sbjct 142232 TGAGAGATAAAGAACTGCTCATC-CTTGTTCATGCGGTTGTTCCAGTCGTGAAGATCCTT 142290
Query 19452 AGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCA 19511
||| | ||| | || ||| | ||||| || |||||||| || || || ||||| | |||
Sbjct 142291 AGACAGATCAATCTCCTCAGCAGTCCAGAACGAAGCCTCGGCCTTCTTGTACATCTGCCA 142350
Query 19512 TATATCA 19518
|| |||
Sbjct 142351 AATCTCA 142357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562104275024160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |