Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq13 105 5e-18
seq157 104 2e-17
>seq13
Length=240985
Score = 105 bits (116), Expect = 5e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
|| || || || |||||||| || || | || | || || | |||||| ||||||||
Sbjct 38153 TCCTTCTGGATGTTGTAATCGGAAAGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAG 38094
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
||||| ||||| || |||| |||| |||||||||||| ||||| || |||
Sbjct 38093 ATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 38034
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | || || || | ||| ||||||| ||||| || ||||| |||| ||| || ||
Sbjct 38033 TCGATAGTGTCGGAAGACTCAACCTCCAAGGTAATGGTCTTTCCAGTCAGAGTCTTGACG 37974
Query 48756 AAAATCTGCAT 48766
|||||||||||
Sbjct 37973 AAAATCTGCAT 37963
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || ||| || || ||||| ||||| || || ||| | ||| | || ||
Sbjct 38627 ACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCA 38568
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| || ||||| ||||| ||||| || |||| ||||| |||||||||||| |
Sbjct 38567 AGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGA 38508
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || ||| | | | || || | ||| || || | ||||| || |||
Sbjct 38507 ATCTTGGACTTGACATTGTCAATGGTATCAGAAGACTCAACTTCAAGAGTAATGGTCTTT 38448
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || | || || || |||||||||||
Sbjct 38447 CCAGTGAGGGTCTTGACGAAAATCTGCAT 38419
Score = 95.1 bits (104), Expect = 9e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || || ||||| ||||| ||| | || | || || | ||||||||| || ||
Sbjct 38382 CTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGTCCATCCTCAAGCTGCTTACCAGCGAA 38323
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| || ||||||||||||| ||||| |||||||||||| |||||| || ||
Sbjct 38322 AATGAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTCACGTT 38263
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || || | ||| ||||||| ||||| || || || || | || || ||
Sbjct 38262 GTCAATGGTATCAGAAGACTCGACCTCCAAGGTAATAGTCTTACCAGTGAGGGTCTTGAC 38203
Query 48755 AAAAATCTGCAT 48766
|| ||||||||
Sbjct 38202 GAAGATCTGCAT 38191
Score = 91.5 bits (100), Expect = 1e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||| || || ||| ||| || ||||| ||||| || || ||| | ||| | || ||
Sbjct 37943 ACCAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCA 37884
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| || ||||||||||| ||||| || |||| |||| |||||||||||| |
Sbjct 37883 AGCTGCTTTCCAGCAAATATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 37824
Query 48678 ATCTT 48682
|||||
Sbjct 37823 ATCTT 37819
>seq157
Length=65766
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638
|| ||||| ||||| ||||| || | || | || |||| |||||| || ||||| |||
Sbjct 45138 TTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 45079
Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698
|| ||||| ||||||| ||||| ||||||||| || ||||| || ||| |
Sbjct 45078 AGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCG 45019
Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758
| | || || | ||| ||||| | |||||||| || ||||| | || || || |||
Sbjct 45018 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTAACGAAA 44959
Query 48759 ATCTGCATCGTG 48770
||||||||| ||
Sbjct 44958 ATCTGCATCTTG 44947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380934610116012
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |