Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq116 181 3e-40 seq46 120 9e-22 seq42 100 8e-16 seq126 89.7 2e-12 seq80 86.0 2e-11 >seq116 Length=85249 Score = 181 bits (200), Expect = 3e-40 Identities = 594/911 (65%), Gaps = 19/911 (2%) Strand=Plus/Minus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 || || | ||||||| ||||||||| || || |||||| || | |||||||||||| Sbjct 69154 TACTCGATAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCCAGATTCTTCTGGTTG 69095 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 || | ||| ||| |||||||| | ||| | ||| |||| ||||| | || || Sbjct 69094 CTCTTCCGGTTGCAATGGTCCTTGTACAACATGAAGGGGTTTCCGGTCTCGGTTTGGGCC 69035 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTG-CCTTCCGA 155809 |||||||| |||||| | | || ||||| | | | | | || ||| Sbjct 69034 TCCAGAATGGCATACCAGAGCTTCTGAGCCTTAATG-GTTAGACGGCCACGACCCTCCTT 68976 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 ||||| ||| ||||| | | | || || ||||| || ||| ||| |||||||| Sbjct 68975 TTCATACTTCTCGTACAGAGCCTCGAATTCATCGCCGTAGCAGTCAGCCAGGCCAGGGCA 68916 Query 155870 CTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAATAC 155926 || | |||||| | ||| | ||| | || || | || ||||| ||| || | Sbjct 68915 CTCGTTGGGGCACATCAGAGTCCAGTCACCATTCTTCTCAAT---ACGCTTCATGAACAG 68859 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 |||| ||| | |||| ||| || || | || |||||| | ||||||||| Sbjct 68858 ATCAGGGATCCACAGAGCAAGGAACAGATCACGGGCGCGAACCTCCTCCTTGCCGTGATT 68799 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATA--TCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||| || || || | ||| || |||| || | ||| ||||| ||||| |||||| Sbjct 68798 CTTGCGGAGATCGAGGAACTCA--AATACGTCTGCATGCCAAGGCTCAAGATAAATAGCA 68741 Query 156045 AAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 ||| ||| | | | ||||||||||| || ||||| || ||||| || ||||||||| Sbjct 68740 AAAGCACCGGGACGCTTGTTGCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAGACA 68681 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGAATATGCGAACCAGA 156160 | ||||| |||| ||||| || ||||| || ||||| || ||| || | || || | Sbjct 68680 CGGAGCATGGGAACGATACCGTTAGAAGTACCGTTGGTACCAGCG-ATGTAAGAGCCGGT 68622 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGC 156219 | || | | |||| | || ||||||||||| | |||| || ||||| ||| | Sbjct 68621 AGCACGGATACGGTGAACGTTGAGGCCAATACCACCCG-CCATCTTGGAAATCATAGCAC 68563 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 | ||| | |||| | ||||| ||||| ||||| | ||| | || ||| Sbjct 68562 AAGTCTTCAAGGTATCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAGC 68503 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 ||||| | || | | || || ||||| ||||| || || || | ||||||| | | Sbjct 68502 ACGAAGAGAGCTGCGCCTGGGGAGTACCAGCATTGAACAGAGTGGGGGATGCATGAGTGA 68443 Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAA 156399 | |||| ||||||| | ||| |||||| || ||| | ||| || || Sbjct 68442 AGAACTTGCTAGACATGAGGTTGTAAGTCTCCAGAACACGCTCGACATTGTCACCCCAAA 68383 Query 156400 TACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTC 156459 | | || || | ||| ||| ||||| || ||||| |||||| ||||||| Sbjct 68382 CGCCAACAGCAACACGCATGATCATGTGCTGGGGGCGCTCAACAATCTTGCCATCAAGCT 68323 Query 156460 GCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGT 156519 || || || | || ||||| || || || || || || | | | |||||||||| Sbjct 68322 TAAGGAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAGTACTGATAGTTGAAATCACGGT 68263 Query 156520 TGTAATCAATC 156530 || ||||| Sbjct 68262 CATACACAATC 68252 >seq46 Length=146035 Score = 120 bits (132), Expect = 9e-22 Identities = 295/445 (66%), Gaps = 2/445 (0%) Strand=Plus/Minus Query 133214 TTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTA 133273 ||||| ||| ||| | || || |||||||| |||||| ||||| || || | Sbjct 142242 TTTATCTCTCACATTCTCGCTTTCTTTGCTGCTTCTGATGGCATTGTGAACGAGAACCTT 142183 Query 133274 GGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAG 133333 | || ||| | || ||||| | |||| || || ||| || || | ||| Sbjct 142182 GTTGAGCGCTTTTCCGCTGAGGTTCAGGTTCCCGAGGCTCGCTGCTTCTACGGTTTCCAG 142123 Query 133334 ATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAA 133393 || |||||| || || || ||| || || || || ||||||||||||||||| Sbjct 142122 ATCATGATGGAGAACATTCACTCTGAGACCTACTCCCTGCTGATTGATACTTACATCAAG 142063 Query 133394 GATACCGTCCAGAAGCACAAA-CTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAA 133452 || ||| |||| |||| | || || ||||||||| | |||| || ||| Sbjct 142062 GAGCCCGCCCAGC-GCACTTATCTCTTTAACGCCATTGACACCATTCCCTGCATTCGCCG 142004 Query 133453 GAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCT 133512 || | || ||||| | || ||||| |||||| | | |||||| || || Sbjct 142003 CAAGGCCGATTGGGCCCTGAAGTGGATTGCCGACAAGGAATCCACCTTTGCTCAGCGCCT 141944 Query 133513 CGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTG 133572 |||||||||||| | || ||||| || || ||| ||||| || ||| || || || Sbjct 141943 CGTTGCTTTTGCGGCCGTCGAGGGTATCTTCTTCTCCGGTGCCTTTGCCTCCATCTTCTG 141884 Query 133573 GCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGA 133632 | | ||||||||| | | ||||| ||| |||||| || || || ||||| | || Sbjct 141883 GTTGCGCAAGCGTGGTCTCATGCCTGGCCTGACTTTTTCCAATGAGCTGATTTCTCGTGA 141824 Query 133633 CGAGGCACTTCACACCGAATTTGCC 133657 ||||| ||||||||||| |||||| Sbjct 141823 CGAGGGTCTTCACACCGACTTTGCC 141799 >seq42 Length=153607 Score = 100 bits (110), Expect = 8e-16 Identities = 382/593 (64%), Gaps = 24/593 (4%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || ||||| || | | ||| | || || ||| | ||||| ||| | ||| | | || Sbjct 99346 ATCAGACCGCAAATCTCACAGATGTGTACTCTGAACGCATCCGATACCTCAAACAAACGC 99405 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| | ||||||||| | ||||||||||||||| ||||||||||| ||| Sbjct 99406 TCCTTCAAGAACGCTGCTGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAAAA 99465 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || ||||||||||| | || | |||||| ||||||| | || | | || || Sbjct 99466 CGCAGACCACCATCTCTGGCACGACCCTCCACAGGCTGTCTCGTCATGATCTGCACCGGG 99525 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 || || || || ||| || | ||||| || |||||||||||| ||| Sbjct 99526 CCACGGGCACGCGCGTGAATCTTGTCGTCGACCATGTGACGCAGACGCTGGTAGTATGTA 99585 Query 251647 GGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAAC 251702 || || | ||| | ||||| || || | |||||| | ||| |||| | Sbjct 99586 GGTCCAAAGAACACCTGTGCTC----TCAGTTTCCGTCCAGTGTGTCCGTGGTACAGCGC 99641 Query 251703 TTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCAC-CAATC- 251760 ||| ||| ||| | || || | ||| || | | |||| ||| |||| Sbjct 99642 CTCGAAACCACGAGACTGGTATCC---GTGCTG--GCGCAGCAGCATGGACACGGAATCG 99696 Query 251761 ---TTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTG 251817 ||| | | ||| |||| |||| || | ||||||| | | | || || Sbjct 99697 ACAGTGACGTCAGTGAAAGGGGTGGCGTCACCCTCAAGACCCTTAAGGGTAGCAACCTTA 99756 Query 251818 CCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTG 251877 | | ||| ||| ||| ||||| || ||||||||| |||||| || ||||| || Sbjct 99757 CTCAGAAGACACTCAATCAAATGGGCAATGGTCATACGAGAGGGAATGGCGTGGGGGTTA 99816 Query 251878 ATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCC--TCAATA- 251934 |||||||| || || | | || || |||||||||||||| |||| || || Sbjct 99817 ATGATGATATCAGGCGTAATACCCTCGCGGGTGAAGGGCATATC---TTCCTGTCTGTAG 99873 Query 251935 ATGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | ||||| || || || |||||||||||||| ||||| |||||||| Sbjct 99874 GTAACACCAATTGTACCTTTCTGTCCGTGACGAGAGGCAAACTTGTCACCAAT 99926 Score = 96.9 bits (106), Expect = 1e-14 Identities = 55/56 (98%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATC 233328 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 99424 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAAAACGCAGACCACCATC 99479 >seq126 Length=79336 Score = 89.7 bits (98), Expect = 2e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 251482 GATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCG 251541 |||||||||| | ||||| ||||||||||||||||||||| | ||| | |||||| ||| Sbjct 62094 GATGCACCGTACGCAATCAAACAATCACGCTCCATTTCACCCAGACGCAAACCACCTTCG 62035 Query 251542 CGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTA 251601 || | | ||| || | |||||| || || || | |||||| |||| || Sbjct 62034 CGGGAACGACCTTCAGTAGGCTGGCGGGTAAGCGAGGCACGAGGACCCGTGGAACGAGAG 61975 Query 251602 TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATG--AAGA 251659 || ||| || | ||||| ||||| | ||||||||| | ||||||| || |||| Sbjct 61974 TGCATCTTGTCTTGCACCATGTGCTTCAAGCGCTGGTAGTAAATGGGACCGTTGTAAAGA 61915 Query 251660 T 251660 | Sbjct 61914 T 61914 >seq80 Length=109397 Score = 86.0 bits (94), Expect = 2e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 354015 GGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAAC 354074 ||||||| |||| || ||||||||||| | ||| |||||||| |||||||| | ||| | Sbjct 88496 GGCGAGACCACCGAGAGAGTCACGGTCCAAGAAGTTAGTAGGCTCGTCAAGAACAAGCAA 88555 Query 354075 GTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 ||| || | ||||||| || | || | || ||||| |||||||| || || || || Sbjct 88556 GTGGGGGTTGTTCCACATGGCACCGGCAATGACGACCTTGACCTTCTGGCCACCGGACAG 88615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471805455665028