Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq124 158 1e-32 seq46 132 6e-25 seq116 118 1e-20 seq5 109 7e-18 seq143 89.7 6e-12 >seq124 Length=79758 Score = 158 bits (174), Expect = 1e-32 Identities = 274/396 (69%), Gaps = 12/396 (3%) Strand=Plus/Plus Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCC---GTG 18152 ||| |||||||| || || ||||||||| |||||||||||| | |||| || ||| Sbjct 33101 CTTCGGCGAGTCCCATGGAAAGGGCGTCGGTTGCATCATCGACAAC-TGCCCCCCCGGTG 33159 Query 18153 CATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGG 18212 | || || ||||||||||||||||||| || | || ||||| || || || Sbjct 33160 --TCCCTCTCACCGAGGCCGACATCCAGCCCCAACTTACCCGCCGCCGCCCCGGTCAATC 33217 Query 18213 CGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAA 18272 ||| | |||| || ||||| || || ||||| | ||||| || || || || Sbjct 33218 CGCCATCACCACCCCCCGCAATGAAAAAGACCGCGTTACCATCCTCTCCGGTGTTGAAAA 33277 Query 18273 CGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGT 18332 ||||| || |||||| | ||| ||| |||| || ||||| |||||||| ||| Sbjct 33278 TGGCCTGACCCTCGGCACCCCCATCGCCCTCACCGTCCCCAACGAGGACCAGCGCCCCAA 33337 Query 18333 CGACTATTCCGAC------ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTA 18386 ||||| | || ||| |||| || || || || |||||||||| |||||| Sbjct 33338 GGACTACGGCAACAAGACTATGGACAAGTACCCTCGTCCTTCCCACGCCGACTTCACCTA 33397 Query 18387 CATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGAC 18446 | | || || ||||||||||| || || ||||| || || || || ||||| ||||| Sbjct 33398 CCAAGAGAAATATGGCATCAAGGCCTCATCCGGCGGCGGTCGTTCCTCCGCCCGTGAGAC 33457 Query 18447 CCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 | || || ||||| || || ||||||||||| Sbjct 33458 GATTGCTCGTGTTGCCGCTGGTGCTGTCGCCGAGAA 33493 >seq46 Length=146035 Score = 132 bits (146), Expect = 6e-25 Identities = 227/324 (70%), Gaps = 9/324 (3%) Strand=Plus/Plus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||| || || |||||| |||||| |||||||||||||| | ||||| || Sbjct 141502 CGCCTTCTGGTAATCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAAAT 141561 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 |||||| | ||| ||||||| | ||||||| ||| ||| || || | | Sbjct 141562 GTTCTCCATGAAGTCGAAGGGGTTGGAAGCCTTGTAGACCTTCTCGTTACCAAGGGCAAC 141621 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||| || |||||||| || |||||||||||| ||||||| | |||||||| |||| Sbjct 141622 GAGAAGACGGTCGGCAACGAACTCGATGTACGTCTTCATGAGGTCAGCGTTCATACCGAG 141681 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 || || ||||| | |||| | | ||||| ||||| || |||| || ||| ||| Sbjct 141682 AAGGGCACAGGGCAGGGCCTCGGTAAGGAACTCCTTCTCAATAGCGACAGCATCGGTGAT 141741 Query 868930 GATCTGCCTGGGCACGT--CGGCCGAGGGC--TTGTTGACGAGCATCGTGTAGAGCAGGC 868985 ||| | ||||| || | | ||||| ||||||| | | | ||| | |||| Sbjct 141742 GAT-TTCCTGGATCAGTTGCTTGCTAGGGCGGTTGTTGAGGTG---AGAGTACAAGAGGC 141797 Query 868986 AGGCAAAGTCGCAGTGCA-ACCCT 869008 ||||||||||| ||| | ||||| Sbjct 141798 AGGCAAAGTCGGTGTGAAGACCCT 141821 Score = 107 bits (118), Expect = 2e-17 Identities = 200/289 (69%), Gaps = 11/289 (4%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| |||| || ||| ||| | ||||| |||||||| || ||||| Sbjct 141817 ACCCTCGTCACGAGAAATCAGCTCATTGGAAAAAGTCAGGCCAGGCATGAGACCACGCTT 141876 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 | ||| ||||||| | || || ||||| ||||| ||||||||||| ||||| Sbjct 141877 GCGCAACCAGAAGATGGAGGCAAAGGCACCGGAGAAGAAGATACCCTCGACGGCCGCAAA 141936 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCGC 869355 | | ||| |||| ||||||||| || ||||||| | |||||||||| || Sbjct 141937 AGCAACGAGGCGCTGAGCAAAGGTG--GA----TTCCTTGTCGGCAATCCACTTCAGGGC 141990 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCT 869414 ||| |||||||| | | | || | ||||| |||||| |||||| | || | Sbjct 141991 CCAATCGGCCTTGCGGCGAATGCAGGGAATGGTGTCAATGGCGTTAAAGAGATAAGTGC- 142049 Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| || ||||||| || || || ||||| || || |||||||| Sbjct 142050 GCTGGGCGGGCTCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGTCTC 142098 Score = 89.7 bits (98), Expect = 6e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 869825 AGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACT 869884 || || | |||||| || ||||||| ||| ||||||||||| |||||||||| ||| | Sbjct 142295 AGATCAATCTCCTCAGCAGTCCAGAACGAAGCCTCGGCCTTCTTGTACATCTGCCAAATC 142354 Query 869885 TGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 | ||||| ||| ||||| || || |||||||| ||||| || ||| ||| || || Sbjct 142355 TCATGGTACTTGATGGGGAAAAGCACGAAGCGGTTAGGGTTCTCCTGCAGCAGAGGCTC 142413 >seq116 Length=85249 Score = 118 bits (130), Expect = 1e-20 Identities = 307/468 (66%), Gaps = 15/468 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || || || || |||| ||| ||||| ||||||||||| |||| ||||| || Sbjct 68714 CTGGTCAACATAACGGGCAGTGTTGTTGAAGACACGGAGCATGGGAACGATACCGTTAGA 68655 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || || | ||| | ||||| || || | ||| || | ||| Sbjct 68654 AGTACCGTTGGTACCAGCGATGTAAGAGCCGGTAGCACGGATACGGTGAACGTTGAGGCC 68595 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| |||||| || | || || || | || || ||||| ||||| Sbjct 68594 AATACCACCCGCCATCTTGGAAATCATAGCACAAGTCTTCAAGGTATCATAGATACCCTC 68535 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||||| || || |||||||| ||| |||| || | || || Sbjct 68534 AATGCTGTCATCCTTCATGTCAACCAGGAAGCACGAAGAGAGCTGCGCCTGGGGAGTACC 68475 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 || ||||| || ||||| | || ||||| |||| | |||||| || ||| || Sbjct 68474 AGCATTGAACAGAGTGGGGGATGCATGAGTGAAGAACTTGCTAGACATGAGGTTGTAAGT 68415 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 | || || ||| | | ||| ||| | |||| | ||| | || || Sbjct 68414 CTCCAGAACACGCTCGA---CATTGTC----------ACCCCAAA--CGCCAACAGCAAC 68370 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| |||||| ||||| || | ||| | ||| || ||||| Sbjct 68369 ACGCATGATCATGTGCTGGGGGCGCTCAACAATCTTGCCATCAAGCTTAAGGAGATAGGA 68310 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTC 1630532 || || |||| ||| ||||||||| | || ||||| ||||| Sbjct 68309 ACGCTCCAGGGTCTTGAAGCCAAAGTACTGATAGTTGAAATCACGGTC 68262 Score = 89.7 bits (98), Expect = 6e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 1627870 TCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGGCC 1627929 || || || ||||| || || || || || || |||||||||| ||| || | ||| Sbjct 69382 TCAGCAAGACCCTGAACACCCACACCAATGGGACGGTGGCGCATGTTGCTGTTGTAAGCC 69323 Query 1627930 TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCTGG 1627989 ||||| || ||||||||||||| ||| || | |||||| | ||||| || || |||| | Sbjct 69322 TCGGGAACGGGGTAGTGGTTGACGTCAATGATGCGGTTCAAGTTGCGAACAACAACCTTG 69263 Query 1627990 ACGATCTCGTGCAG 1628003 || ||||||||| Sbjct 69262 GTGACCTCGTGCAG 69249 >seq5 Length=342721 Score = 109 bits (120), Expect = 7e-18 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||||||||| ||||| |||| || ||| |||| |||||| | || |||||| Sbjct 269696 GCTGCGAACTACCTCGATATCAAAGCTCTTCTTGATGTTGGCTGCAAGACAGTCGCCAAC 269755 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 ||||| ||||||||||| || ||||| ||||| ||||| || |||||| Sbjct 269756 ATGATTAAGGGCAAGTCTCCTGAGGAAATCCGTAAGACTTTCAACATC 269803 >seq143 Length=70988 Score = 89.7 bits (98), Expect = 6e-12 Identities = 128/180 (71%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 1852072 CATCTTGCCGCTCTCGGTGAGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCG 1852131 ||| ||||| | ||| || || || || | ||||| | |||||| |||| ||| Sbjct 967 CATTTTGCCAC---CGGACAGACCAGGAACCATAGGGTTCATGAGGTGGCAGCGGTTCTT 1023 Query 1852132 ATAGCCGAGGACCGGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCC 1852191 |||||| |||| | ||| ||| || |||| |||||||||||||| | || Sbjct 1024 GAAGCCGATTTTGGGCATGGCATCGTGCGACAAACCAAAGATCTTGCGCTGGTCAAGGCC 1083 Query 1852192 GCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAG 1852251 ||||||| |||||||||||| |||| || ||| || || ||||||||| ||||| || Sbjct 1084 ACCAAACTCGGCGTCGACGTCAAGGTACTCCTCATCCAGAAGCTGCATGAGAGGGTACAG 1143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107086350344148