Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq124 158 1e-32
seq46 132 6e-25
seq116 118 1e-20
seq5 109 7e-18
seq143 89.7 6e-12
>seq124
Length=79758
Score = 158 bits (174), Expect = 1e-32
Identities = 274/396 (69%), Gaps = 12/396 (3%)
Strand=Plus/Plus
Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCC---GTG 18152
||| |||||||| || || ||||||||| |||||||||||| | |||| || |||
Sbjct 33101 CTTCGGCGAGTCCCATGGAAAGGGCGTCGGTTGCATCATCGACAAC-TGCCCCCCCGGTG 33159
Query 18153 CATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGG 18212
| || || ||||||||||||||||||| || | || ||||| || || ||
Sbjct 33160 --TCCCTCTCACCGAGGCCGACATCCAGCCCCAACTTACCCGCCGCCGCCCCGGTCAATC 33217
Query 18213 CGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAA 18272
||| | |||| || ||||| || || ||||| | ||||| || || || ||
Sbjct 33218 CGCCATCACCACCCCCCGCAATGAAAAAGACCGCGTTACCATCCTCTCCGGTGTTGAAAA 33277
Query 18273 CGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGT 18332
||||| || |||||| | ||| ||| |||| || ||||| |||||||| |||
Sbjct 33278 TGGCCTGACCCTCGGCACCCCCATCGCCCTCACCGTCCCCAACGAGGACCAGCGCCCCAA 33337
Query 18333 CGACTATTCCGAC------ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTA 18386
||||| | || ||| |||| || || || || |||||||||| ||||||
Sbjct 33338 GGACTACGGCAACAAGACTATGGACAAGTACCCTCGTCCTTCCCACGCCGACTTCACCTA 33397
Query 18387 CATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGAC 18446
| | || || ||||||||||| || || ||||| || || || || ||||| |||||
Sbjct 33398 CCAAGAGAAATATGGCATCAAGGCCTCATCCGGCGGCGGTCGTTCCTCCGCCCGTGAGAC 33457
Query 18447 CCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
| || || ||||| || || |||||||||||
Sbjct 33458 GATTGCTCGTGTTGCCGCTGGTGCTGTCGCCGAGAA 33493
>seq46
Length=146035
Score = 132 bits (146), Expect = 6e-25
Identities = 227/324 (70%), Gaps = 9/324 (3%)
Strand=Plus/Plus
Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749
|||||| ||| || || |||||| |||||| |||||||||||||| | ||||| ||
Sbjct 141502 CGCCTTCTGGTAATCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGCGAAAT 141561
Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809
|||||| | ||| ||||||| | ||||||| ||| ||| || || | |
Sbjct 141562 GTTCTCCATGAAGTCGAAGGGGTTGGAAGCCTTGTAGACCTTCTCGTTACCAAGGGCAAC 141621
Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869
||| || |||||||| || |||||||||||| ||||||| | |||||||| ||||
Sbjct 141622 GAGAAGACGGTCGGCAACGAACTCGATGTACGTCTTCATGAGGTCAGCGTTCATACCGAG 141681
Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929
|| || ||||| | |||| | | ||||| ||||| || |||| || ||| |||
Sbjct 141682 AAGGGCACAGGGCAGGGCCTCGGTAAGGAACTCCTTCTCAATAGCGACAGCATCGGTGAT 141741
Query 868930 GATCTGCCTGGGCACGT--CGGCCGAGGGC--TTGTTGACGAGCATCGTGTAGAGCAGGC 868985
||| | ||||| || | | ||||| ||||||| | | | ||| | ||||
Sbjct 141742 GAT-TTCCTGGATCAGTTGCTTGCTAGGGCGGTTGTTGAGGTG---AGAGTACAAGAGGC 141797
Query 868986 AGGCAAAGTCGCAGTGCA-ACCCT 869008
||||||||||| ||| | |||||
Sbjct 141798 AGGCAAAGTCGGTGTGAAGACCCT 141821
Score = 107 bits (118), Expect = 2e-17
Identities = 200/289 (69%), Gaps = 11/289 (4%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| ||| |||| || ||| ||| | ||||| |||||||| || |||||
Sbjct 141817 ACCCTCGTCACGAGAAATCAGCTCATTGGAAAAAGTCAGGCCAGGCATGAGACCACGCTT 141876
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
| ||| ||||||| | || || ||||| ||||| ||||||||||| |||||
Sbjct 141877 GCGCAACCAGAAGATGGAGGCAAAGGCACCGGAGAAGAAGATACCCTCGACGGCCGCAAA 141936
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCGC 869355
| | ||| |||| ||||||||| || ||||||| | |||||||||| ||
Sbjct 141937 AGCAACGAGGCGCTGAGCAAAGGTG--GA----TTCCTTGTCGGCAATCCACTTCAGGGC 141990
Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCT 869414
||| |||||||| | | | || | ||||| |||||| |||||| | || |
Sbjct 141991 CCAATCGGCCTTGCGGCGAATGCAGGGAATGGTGTCAATGGCGTTAAAGAGATAAGTGC- 142049
Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| ||| || ||||||| || || || ||||| || || ||||||||
Sbjct 142050 GCTGGGCGGGCTCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGTCTC 142098
Score = 89.7 bits (98), Expect = 6e-12
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 869825 AGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACT 869884
|| || | |||||| || ||||||| ||| ||||||||||| |||||||||| ||| |
Sbjct 142295 AGATCAATCTCCTCAGCAGTCCAGAACGAAGCCTCGGCCTTCTTGTACATCTGCCAAATC 142354
Query 869885 TGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943
| ||||| ||| ||||| || || |||||||| ||||| || ||| ||| || ||
Sbjct 142355 TCATGGTACTTGATGGGGAAAAGCACGAAGCGGTTAGGGTTCTCCTGCAGCAGAGGCTC 142413
>seq116
Length=85249
Score = 118 bits (130), Expect = 1e-20
Identities = 307/468 (66%), Gaps = 15/468 (3%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| || || || || |||| ||| ||||| ||||||||||| |||| ||||| ||
Sbjct 68714 CTGGTCAACATAACGGGCAGTGTTGTTGAAGACACGGAGCATGGGAACGATACCGTTAGA 68655
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||||| || || | ||| | ||||| || || | ||| || | |||
Sbjct 68654 AGTACCGTTGGTACCAGCGATGTAAGAGCCGGTAGCACGGATACGGTGAACGTTGAGGCC 68595
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| || || ||| |||||| || | || || || | || || ||||| |||||
Sbjct 68594 AATACCACCCGCCATCTTGGAAATCATAGCACAAGTCTTCAAGGTATCATAGATACCCTC 68535
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| |||||||||| || || |||||||| ||| |||| || | || ||
Sbjct 68534 AATGCTGTCATCCTTCATGTCAACCAGGAAGCACGAAGAGAGCTGCGCCTGGGGAGTACC 68475
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|| ||||| || ||||| | || ||||| |||| | |||||| || ||| ||
Sbjct 68474 AGCATTGAACAGAGTGGGGGATGCATGAGTGAAGAACTTGCTAGACATGAGGTTGTAAGT 68415
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
| || || ||| | | ||| ||| | |||| | ||| | || ||
Sbjct 68414 CTCCAGAACACGCTCGA---CATTGTC----------ACCCCAAA--CGCCAACAGCAAC 68370
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| |||||| ||||| || | ||| | ||| || |||||
Sbjct 68369 ACGCATGATCATGTGCTGGGGGCGCTCAACAATCTTGCCATCAAGCTTAAGGAGATAGGA 68310
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTC 1630532
|| || |||| ||| ||||||||| | || ||||| |||||
Sbjct 68309 ACGCTCCAGGGTCTTGAAGCCAAAGTACTGATAGTTGAAATCACGGTC 68262
Score = 89.7 bits (98), Expect = 6e-12
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 1627870 TCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGGCGGGCC 1627929
|| || || ||||| || || || || || || |||||||||| ||| || | |||
Sbjct 69382 TCAGCAAGACCCTGAACACCCACACCAATGGGACGGTGGCGCATGTTGCTGTTGTAAGCC 69323
Query 1627930 TCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACGACCTGG 1627989
||||| || ||||||||||||| ||| || | |||||| | ||||| || || |||| |
Sbjct 69322 TCGGGAACGGGGTAGTGGTTGACGTCAATGATGCGGTTCAAGTTGCGAACAACAACCTTG 69263
Query 1627990 ACGATCTCGTGCAG 1628003
|| |||||||||
Sbjct 69262 GTGACCTCGTGCAG 69249
>seq5
Length=342721
Score = 109 bits (120), Expect = 7e-18
Identities = 89/108 (82%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| || ||||||||||| ||||| |||| || ||| |||| |||||| | || ||||||
Sbjct 269696 GCTGCGAACTACCTCGATATCAAAGCTCTTCTTGATGTTGGCTGCAAGACAGTCGCCAAC 269755
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293
||||| ||||||||||| || ||||| ||||| ||||| || ||||||
Sbjct 269756 ATGATTAAGGGCAAGTCTCCTGAGGAAATCCGTAAGACTTTCAACATC 269803
>seq143
Length=70988
Score = 89.7 bits (98), Expect = 6e-12
Identities = 128/180 (71%), Gaps = 3/180 (2%)
Strand=Plus/Plus
Query 1852072 CATCTTGCCGCTCTCGGTGAGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCG 1852131
||| ||||| | ||| || || || || | ||||| | |||||| |||| |||
Sbjct 967 CATTTTGCCAC---CGGACAGACCAGGAACCATAGGGTTCATGAGGTGGCAGCGGTTCTT 1023
Query 1852132 ATAGCCGAGGACCGGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCC 1852191
|||||| |||| | ||| ||| || |||| |||||||||||||| | ||
Sbjct 1024 GAAGCCGATTTTGGGCATGGCATCGTGCGACAAACCAAAGATCTTGCGCTGGTCAAGGCC 1083
Query 1852192 GCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAG 1852251
||||||| |||||||||||| |||| || ||| || || ||||||||| ||||| ||
Sbjct 1084 ACCAAACTCGGCGTCGACGTCAAGGTACTCCTCATCCAGAAGCTGCATGAGAGGGTACAG 1143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107086350344148
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |