Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq13 122 6e-23
seq3 120 2e-22
seq157 105 4e-18
>seq13
Length=240985
Score = 122 bits (134), Expect = 6e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | ||| |||||||||||||| ||||| || || |||| ||||
Sbjct 38630 AGAACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCC 38571
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || |||||||| || |||||||| || |||||||| | || | |||||||||||
Sbjct 38570 TCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 38511
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || ||||| | || | ||| | ||| || |||| || ||||||
Sbjct 38510 TGAATCTTGGACTTGACATTGTCAATGGTATCAGAAGACTCAACTTCAAGAGTAATGGTC 38451
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| ||||||||||| || || ||||||||
Sbjct 38450 TTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 38419
Score = 104 bits (114), Expect = 2e-17
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||| ||||||||||||||| ||||| || || |||| ||||
Sbjct 37946 AGGACCAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCC 37887
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || |||||||| || || ||||| || |||||||| | || | |||||||||||
Sbjct 37886 TCAAGCTGCTTTCCAGCAAATATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 37827
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || || ||| || || | ||| ||||||
Sbjct 37826 TGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 37767
Query 34946 TTTCCCGTGA 34955
|| || ||||
Sbjct 37766 TTGCCGGTGA 37757
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | ||| |||||||| ||||| || || || ||| | || ||||
Sbjct 38174 AGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGGGTACGGCCATCC 38115
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| ||||| |||||||| || |||||||| | || | |||||||||||
Sbjct 38114 TCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 38055
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| || | ||| || || | ||| ||
Sbjct 38054 TGGATCTTGGACTTGAC--AT--TGTCGATAGTGTCGGAAGACTCAACCTCCAAGGTAAT 37999
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||||||| || || ||||| || || ||||||||
Sbjct 37998 GGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 37963
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||||||| | ||| ||||||||| ||||| ||||| || || | || ||||
Sbjct 38402 AGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGTCCATCC 38343
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || ||||| || || || || || || | || | |||||||||||
Sbjct 38342 TCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCC 38283
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | || | ||| | |||||| || | ||| || |||
Sbjct 38282 TGAATCTTCGACTTCACGTTGTCAATGGTATCAGAAGACTCGACCTCCAAGGTAATAGTC 38223
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || ||||||||||| || |||||||||||
Sbjct 38222 TTACCAGTGAGGGTCTTGACGAAGATCTGCAT 38191
>seq3
Length=407529
Score = 120 bits (132), Expect = 2e-22
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||| ||||||||| ||||| ||||| || || |||| ||||
Sbjct 21577 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCC 21518
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || ||||||||||| || |||||||| | || | |||||||| ||
Sbjct 21517 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCC 21458
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | |||| || | |||||| || | ||| ||||||
Sbjct 21457 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTC 21398
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
|| ||||| |||||||| || | | |||||||
Sbjct 21397 TTACCCGTCAGGGTCTTGACGA--AACTGCATG 21367
>seq157
Length=65766
Score = 105 bits (116), Expect = 4e-18
Identities = 141/194 (73%), Gaps = 8/194 (4%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||||||||| ||||| || ||| |||| |||| ||||| ||||| || || ||||
Sbjct 45140 CCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 45081
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
|||| || ||||| || | || | |||||||| || | || || ||||| ||
Sbjct 45080 TCAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGAC--AT- 45024
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| || || ||| || || | ||| || ||||| ||||| ||||||||
Sbjct 45023 -TGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTA 44965
Query 34964 ACAAAGATCTGCAT 34977
|| || ||||||||
Sbjct 44964 ACGAAAATCTGCAT 44951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325690243718636
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |