Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq13 122 6e-23 seq3 120 2e-22 seq157 105 4e-18 >seq13 Length=240985 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| |||||||||||||| ||||| || || |||| |||| Sbjct 38630 AGAACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCC 38571 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || |||||||| || |||||||| | || | ||||||||||| Sbjct 38570 TCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 38511 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | || | ||| | ||| || |||| || |||||| Sbjct 38510 TGAATCTTGGACTTGACATTGTCAATGGTATCAGAAGACTCAACTTCAAGAGTAATGGTC 38451 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||||||||| || || |||||||| Sbjct 38450 TTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 38419 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||||||||||||||| ||||| || || |||| |||| Sbjct 37946 AGGACCAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCC 37887 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || |||||||| || || ||||| || |||||||| | || | ||||||||||| Sbjct 37886 TCAAGCTGCTTTCCAGCAAATATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 37827 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || ||| || || | ||| |||||| Sbjct 37826 TGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 37767 Query 34946 TTTCCCGTGA 34955 || || |||| Sbjct 37766 TTGCCGGTGA 37757 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| |||||||| ||||| || || || ||| | || |||| Sbjct 38174 AGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGGGTACGGCCATCC 38115 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| |||||||| || |||||||| | || | ||||||||||| Sbjct 38114 TCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 38055 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || || | ||| || Sbjct 38054 TGGATCTTGGACTTGAC--AT--TGTCGATAGTGTCGGAAGACTCAACCTCCAAGGTAAT 37999 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||||| || || ||||| || || |||||||| Sbjct 37998 GGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 37963 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | ||| ||||||||| ||||| ||||| || || | || |||| Sbjct 38402 AGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGTCCATCC 38343 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||| || || || || || || | || | ||||||||||| Sbjct 38342 TCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCC 38283 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| | |||||| || | ||| || ||| Sbjct 38282 TGAATCTTCGACTTCACGTTGTCAATGGTATCAGAAGACTCGACCTCCAAGGTAATAGTC 38223 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || ||||||||||| Sbjct 38222 TTACCAGTGAGGGTCTTGACGAAGATCTGCAT 38191 >seq3 Length=407529 Score = 120 bits (132), Expect = 2e-22 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 21577 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCC 21518 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||||||||| || |||||||| | || | |||||||| || Sbjct 21517 TCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCC 21458 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| || | |||||| || | ||| |||||| Sbjct 21457 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTC 21398 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| |||||||| || | | ||||||| Sbjct 21397 TTACCCGTCAGGGTCTTGACGA--AACTGCATG 21367 >seq157 Length=65766 Score = 105 bits (116), Expect = 4e-18 Identities = 141/194 (73%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||||||||| ||||| || ||| |||| |||| ||||| ||||| || || |||| Sbjct 45140 CCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 45081 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || ||||| || | || | |||||||| || | || || ||||| || Sbjct 45080 TCAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGAC--AT- 45024 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || ||| || || | ||| || ||||| ||||| |||||||| Sbjct 45023 -TGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTA 44965 Query 34964 ACAAAGATCTGCAT 34977 || || |||||||| Sbjct 44964 ACGAAAATCTGCAT 44951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690243718636