Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq46 192 8e-43
seq116 93.3 6e-13
>seq46
Length=146035
Score = 192 bits (212), Expect = 8e-43
Identities = 393/572 (69%), Gaps = 24/572 (4%)
Strand=Plus/Minus
Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775
||||| ||||||| || ||||| |||||||| || || ||||||||| ||||| |
Sbjct 142413 GAGCCTCTGCTGCAGGAGAACCCTAACCGCTTCGTGCTTTTCCCCATCAAGTACCATGAG 142354
Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGA--- 1455832
|| ||| | |||||| || ||||||||||| || || ||||| || |||||| | ||
Sbjct 142353 ATTTGGCAGATGTAC-AAGAAGGCCGAGGCTTCGTTCTGGACTGCTGAGGAGATTGATCT 142295
Query 1455833 -CCTCGGCGCCGACACGGTCCACTGG--GTGTCGC-TGAGCGACGACGAGCGCCATTTCA 1455888
|| | | |||| ||||| ||| ||| | | || |||| || |
Sbjct 142294 GTCTAAGGATCTTCACG----ACTGGAACAACCGCATGAACAAGGATGAGCAGTTCTTTA 142239
Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948
|| ||| | |||| |||| || || || |||||||| ||| ||||||||| |
Sbjct 142238 TCTCTCACATTCTCG-CTTTCTTTGCTGCTTCTGATGGCATTGTGAACGAGAACCTTGTT 142180
Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008
| |||||| ||||| || | || ||||| || | || ||||| |||||||||
Sbjct 142179 GAGCGCTTTTCCGCTGAGGTTCAGGTTCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATC 142120
Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068
|| || ||||| |||||||| |||||||| || ||||| || || ||| |||||||
Sbjct 142119 ATGATGGAGAACATTCACTCTGAGACCTACTCCCTGCTGATTGATACTTACATCAAGGAG 142060
Query 1456069 CCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127
|| | | || | || | |||||| |||||| ||||| | || | | | ||
Sbjct 142059 CCCGCCCAG-CGCACTTATCTCTTTAACGCCATTGACACCATTCCCTGCATTCGCCGCAA 142001
Query 1456128 GGCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAGCGG 1456184
|||||| ||||| |||||||||| | ||||||| || || |||||| ||||
Sbjct 142000 GGCCGATTGGGCCCTGAAGTGGATTGCCGACAAGGA----ATCCAC-CTTTGCTCAGCGC 141946
Query 1456185 CTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTT 1456243
||||| | ||||| | ||||||||| ||||| ||||| || || | |||||||
Sbjct 141945 CTCGTTGCTTTTGCGGCCGTCGAGGGTATCTTCTTCTCCGGTGCCTTTGCCTCCATCTTC 141886
Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||| | ||||| || |||||||| || ||
Sbjct 141885 TGGTTGCGCAAGCGTGGTCTCATGCCTGGCCT 141854
Score = 89.7 bits (98), Expect = 7e-12
Identities = 174/252 (69%), Gaps = 4/252 (2%)
Strand=Plus/Minus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|||||| ||| || |||| || ||||| ||||| | | |||| | ||||| ||
Sbjct 141744 ATCATCACCGATGCTGTCGCTATTGAGAAGGAGTTCCTTACCGAGGCCCTGCCCTGTGCC 141685
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| |||| |||||||| | |||||| |||||| || || || |||||||| |
Sbjct 141684 CTTCTCGGTATGAACGCTGAC-CTCATGAAGACGTACATCGAGTTC-GTTGCCGACCGTC 141627
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
| |||| || || || || ||||| |||| | | ||||||| ||| | |||
Sbjct 141626 TTCTCGTTGCCCTTGGTAACG-AGAAGGTCTACAAGGCTTCCAACCCCTTCGACTTCATG 141568
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761
||| || ||||| | |||||||||||||| |||||| |||| ||| || |||
Sbjct 141567 GAGAACATTTCGCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGTGATTACCAG 141508
Query 1456762 AAGGCCGGCGTC 1456773
||||| || |||
Sbjct 141507 AAGGCGGGTGTC 141496
>seq116
Length=85249
Score = 93.3 bits (102), Expect = 6e-13
Identities = 144/203 (71%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151
|| |||||| |||||| | | |||||| | ||||||||| | |||| |||| | ||||
Sbjct 69013 AGCTCTGGTATGCCATTCTGGAGGCCCAAACCGAGACCGGAAACCCCTTCATGTTGTACA 69072
Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAAC 262210
||||| ||||| || ||||||||| |||| ||||| |||| | ||| |||||
Sbjct 69073 AGGACCATTGCAACCGGAAGAGCAACCAGAAGAATCTGGGTACCATCCGCAGCT-CCAAC 69131
Query 262211 CTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCTCTCG 262270
|||||||| ||||| || ||| || | || |||| ||| |||||||| |
Sbjct 69132 CTGTGCACTGAGATTATCGAGTATTGTGCTCCTGATGAGGTTGCTGTTTGCAACCTTGCC 69191
Query 262271 AGCGTGGCCCTGCCCAAGTTTGT 262293
| |||| || ||| ||||||
Sbjct 69192 TCCTTGGCTCTCCCCGCGTTTGT 69214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177749085016328
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |