Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq116 170 3e-37 seq46 129 8e-25 >seq116 Length=85249 Score = 170 bits (188), Expect = 3e-37 Identities = 365/542 (67%), Gaps = 4/542 (1%) Strand=Plus/Minus Query 69489 CTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546 ||| |||||||| || | ||| | |||| ||||||||||| || | ||| ||| Sbjct 68981 CTCCTTTTCATACTTCTCGTACAGAGCC--TCGAATTCATCGCCGTAGCAGTCAGCCAGG 68924 Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 ||||| || || || || ||||||| | ||| || ||| | || || || ||||| Sbjct 68923 CCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTCACCATTCTTCTCAATACGCTTCATG 68864 Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 || ||||| || ||||| ||||| | || ||||| | || | | || || || || Sbjct 68863 AACAGATCAGGGATCCACAGAGCAAGGAACAGATCACGGGCGCGAACCTCCTCCTTGCCG 68804 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 ||| || |||||||| ||||| | | || | |||||| || || ||||| || Sbjct 68803 TGATTCTTGCGGAGATCGAGGAACTCAAATACGTCTGCATGCCAAGGCTCAAGATAAATA 68744 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || | | || || || || || || ||||| || | || | ||||||||| || || Sbjct 68743 GCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAG 68684 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 || | ||||| |||| ||||| ||||| |||| || || |||| || ||| || Sbjct 68683 ACACGGAGCATGGGAACGATACCGTTAGAAGTACCGTTGGTACCAGCGATGTAAGAGCCG 68624 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 | || || ||| || || || || || || ||||| || || || | |||| Sbjct 68623 GTAGCACGGATACGGTGAACGTTGAGGCCAATACCACCCGCCATCTTGGAAATCATAGCA 68564 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 ||| ||||| || ||||| |||||||| ||||| ||||| |||||| || || || Sbjct 68563 CAAGTCTTCAAGGTATCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAG 68504 Query 69967 CAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTG 70026 || ||| | || || ||| || ||||| || | || || ||||| |||||| Sbjct 68503 CACGAAGAGAGCTGCGCCTGGGGAGTACCAGCATTGAACAGAGTGGGGGATGCATGAGTG 68444 Query 70027 AA 70028 || Sbjct 68443 AA 68442 Score = 93.3 bits (102), Expect = 6e-14 Identities = 206/307 (67%), Gaps = 9/307 (3%) Strand=Plus/Minus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 ||||||||||| || | | || | || ||||| ||||| ||||| ||||| || ||| Sbjct 70105 GTAAACTGAATAGGAGCAGCAGCAGCTTGAGTACGGAGATAATACATGCCGGTCTTAAGA 70046 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || || |||| ||| ||| ||||| || || | ||| | || || || Sbjct 70045 CCCAGCTTCCACCCGGTGAAGTGCATGCTGGTAATCTTGCCCATGGTGGGGTCCTTCATG 69986 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 || ||||| | || ||| ||||||||||||||| || | ||| || ||||| | | | Sbjct 69985 TGGATATTAAGGGACTGAGATTGATCGATGAAAGCACCACGATCGGCAGCCATCTGAACA 69926 Query 68554 A---TACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGA 68610 | ||| | |||| ||||||||| | |||||| | | ||||||||| | ||| Sbjct 69925 ACGGTACGC---TGAGAAATTTCCCACACAGTCTTGTACAGAGCCTTGATATCAGCAGGA 69869 Query 68611 AGGCTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCA 68667 | || | | ||||||||||| || |||| || || ||||| || | |||| Sbjct 69868 ATACTGGGGATGTTTTGAATGGAACCGTTGTCGGCAATGATACGGTTCTTCATGTTATCA 69809 Query 68668 TTCCACA 68674 ||||| Sbjct 69808 GACCACA 69802 >seq46 Length=146035 Score = 129 bits (142), Expect = 8e-25 Identities = 379/582 (65%), Gaps = 8/582 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| || || ||||| || | | ||| | || || ||||| || || Sbjct 141796 GCAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATCAGCTCATTGGAAAAAGTCAG 141855 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| ||||||||||| | ||| || |||| ||||| | || || ||||| Sbjct 141856 GCCAGGCATGAGACCACGCTTGCGCAACCAGAAGATGGAGGCAAAGGCACCGGAGAAGAA 141915 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---G 39792 ||| || || || || ||||| ||||| || | || | | | | || || | Sbjct 141916 GATACCCTCGACGGCCGCAAAAGCAACGAGGCGCTGAGCAAAGGTGGATTCCTTGTCGGC 141975 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||||||| | |||||||| || || | || || || || || || || || Sbjct 141976 AATCCACTTCAGGGCCCAATCGGCCTTGCGGCGAATGCAGGGAATGGTGTCAATGGCGTT 142035 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 |||||||||| | | || || | || ||||| || | ||| || | Sbjct 142036 AAAGAGATAAGTGCGCTGGGCGGGCTCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGT 142095 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || || || ||||| || ||| ||||| || ||||| || || | || || | || Sbjct 142096 CTCAGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAAC 142155 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 || ||||| | |||| | || | | || || ||||| || |||||| ||| || Sbjct 142156 CTGAACCTCAGCGGAAAAGCGCTCAACAAGGTTCTCGTTCACAATGCCATCAGAAGCAGC 142215 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT----TTATTCC 40088 ||| || || | | || ||||| | | ||||| ||| || || |||| Sbjct 142216 AAAGAAAGCGAGAATGTGAGAGATAAAGAACTGCTCATC-CTTGTTCATGCGGTTGTTCC 142274 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||| | | ||| || || | ||| | || ||||| ||||| ||||| ||||| |||| Sbjct 142275 AGTCGTGAAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAACGAAGCCTCGGCCT 142334 Query 40149 TTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAA 40190 | |||||||| | ||| || ||| | || | || || |||| Sbjct 142335 TCTTGTACATCTGCCAAATCTCATGGTACTTGATGGGGAAAA 142376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686903270384160