Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq116 170 3e-37
seq46 129 8e-25
>seq116
Length=85249
Score = 170 bits (188), Expect = 3e-37
Identities = 365/542 (67%), Gaps = 4/542 (1%)
Strand=Plus/Minus
Query 69489 CTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546
||| |||||||| || | ||| | |||| ||||||||||| || | ||| |||
Sbjct 68981 CTCCTTTTCATACTTCTCGTACAGAGCC--TCGAATTCATCGCCGTAGCAGTCAGCCAGG 68924
Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606
||||| || || || || ||||||| | ||| || ||| | || || || |||||
Sbjct 68923 CCAGGGCACTCGTTGGGGCACATCAGAGTCCAGTCACCATTCTTCTCAATACGCTTCATG 68864
Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666
|| ||||| || ||||| ||||| | || ||||| | || | | || || || ||
Sbjct 68863 AACAGATCAGGGATCCACAGAGCAAGGAACAGATCACGGGCGCGAACCTCCTCCTTGCCG 68804
Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726
||| || |||||||| ||||| | | || | |||||| || || ||||| ||
Sbjct 68803 TGATTCTTGCGGAGATCGAGGAACTCAAATACGTCTGCATGCCAAGGCTCAAGATAAATA 68744
Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786
|| | | || || || || || || ||||| || | || | ||||||||| || ||
Sbjct 68743 GCAAAAGCACCGGGACGCTTGTTGCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAG 68684
Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846
|| | ||||| |||| ||||| ||||| |||| || || |||| || ||| ||
Sbjct 68683 ACACGGAGCATGGGAACGATACCGTTAGAAGTACCGTTGGTACCAGCGATGTAAGAGCCG 68624
Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906
| || || ||| || || || || || || ||||| || || || | ||||
Sbjct 68623 GTAGCACGGATACGGTGAACGTTGAGGCCAATACCACCCGCCATCTTGGAAATCATAGCA 68564
Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966
||| ||||| || ||||| |||||||| ||||| ||||| |||||| || || ||
Sbjct 68563 CAAGTCTTCAAGGTATCATAGATACCCTCAATGCTGTCATCCTTCATGTCAACCAGGAAG 68504
Query 69967 CAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTG 70026
|| ||| | || || ||| || ||||| || | || || ||||| ||||||
Sbjct 68503 CACGAAGAGAGCTGCGCCTGGGGAGTACCAGCATTGAACAGAGTGGGGGATGCATGAGTG 68444
Query 70027 AA 70028
||
Sbjct 68443 AA 68442
Score = 93.3 bits (102), Expect = 6e-14
Identities = 206/307 (67%), Gaps = 9/307 (3%)
Strand=Plus/Minus
Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433
||||||||||| || | | || | || ||||| ||||| ||||| ||||| || |||
Sbjct 70105 GTAAACTGAATAGGAGCAGCAGCAGCTTGAGTACGGAGATAATACATGCCGGTCTTAAGA 70046
Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493
|| || |||| ||| ||| ||||| || || | ||| | || || ||
Sbjct 70045 CCCAGCTTCCACCCGGTGAAGTGCATGCTGGTAATCTTGCCCATGGTGGGGTCCTTCATG 69986
Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553
|| ||||| | || ||| ||||||||||||||| || | ||| || ||||| | | |
Sbjct 69985 TGGATATTAAGGGACTGAGATTGATCGATGAAAGCACCACGATCGGCAGCCATCTGAACA 69926
Query 68554 A---TACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGA 68610
| ||| | |||| ||||||||| | |||||| | | ||||||||| | |||
Sbjct 69925 ACGGTACGC---TGAGAAATTTCCCACACAGTCTTGTACAGAGCCTTGATATCAGCAGGA 69869
Query 68611 AGGCTCG---TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCA 68667
| || | | ||||||||||| || |||| || || ||||| || | ||||
Sbjct 69868 ATACTGGGGATGTTTTGAATGGAACCGTTGTCGGCAATGATACGGTTCTTCATGTTATCA 69809
Query 68668 TTCCACA 68674
|||||
Sbjct 69808 GACCACA 69802
>seq46
Length=146035
Score = 129 bits (142), Expect = 8e-25
Identities = 379/582 (65%), Gaps = 8/582 (1%)
Strand=Plus/Plus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
|||||| ||||| || || ||||| || | | ||| | || || ||||| || ||
Sbjct 141796 GCAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAAATCAGCTCATTGGAAAAAGTCAG 141855
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735
|||||||| ||||||||||| | ||| || |||| ||||| | || || |||||
Sbjct 141856 GCCAGGCATGAGACCACGCTTGCGCAACCAGAAGATGGAGGCAAAGGCACCGGAGAAGAA 141915
Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---G 39792
||| || || || || ||||| ||||| || | || | | | | || || |
Sbjct 141916 GATACCCTCGACGGCCGCAAAAGCAACGAGGCGCTGAGCAAAGGTGGATTCCTTGTCGGC 141975
Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852
||||||||| | |||||||| || || | || || || || || || || ||
Sbjct 141976 AATCCACTTCAGGGCCCAATCGGCCTTGCGGCGAATGCAGGGAATGGTGTCAATGGCGTT 142035
Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912
|||||||||| | | || || | || ||||| || | ||| || |
Sbjct 142036 AAAGAGATAAGTGCGCTGGGCGGGCTCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGT 142095
Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972
|| || || ||||| || ||| ||||| || ||||| || || | || || | ||
Sbjct 142096 CTCAGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAAC 142155
Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032
|| ||||| | |||| | || | | || || ||||| || |||||| ||| ||
Sbjct 142156 CTGAACCTCAGCGGAAAAGCGCTCAACAAGGTTCTCGTTCACAATGCCATCAGAAGCAGC 142215
Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT----TTATTCC 40088
||| || || | | || ||||| | | ||||| ||| || || ||||
Sbjct 142216 AAAGAAAGCGAGAATGTGAGAGATAAAGAACTGCTCATC-CTTGTTCATGCGGTTGTTCC 142274
Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148
|||| | | ||| || || | ||| | || ||||| ||||| ||||| ||||| ||||
Sbjct 142275 AGTCGTGAAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAACGAAGCCTCGGCCT 142334
Query 40149 TTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAA 40190
| |||||||| | ||| || ||| | || | || || ||||
Sbjct 142335 TCTTGTACATCTGCCAAATCTCATGGTACTTGATGGGGAAAA 142376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686903270384160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |