Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq46 161 1e-34 >seq46 Length=146035 Score = 161 bits (178), Expect = 1e-34 Identities = 532/813 (65%), Gaps = 17/813 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGA-TATTCTCCAT 129786 || || ||||| ||||||||||||||||| ||||| || |||||| | | |||||||| Sbjct 141512 TAATCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCA-CCAAGCGAAATGTTCTCCAT 141570 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || || || ||||| | || | | | || | |||| ||| |||| Sbjct 141571 GAAGTCGAAGGGGTTGGAAGCCTTGTAGACCTTCTCGTTA-CCAAGGGCAACGAGAAGAC 141629 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | ||| |||| |||||| ||| || | ||||||||||| ||| || Sbjct 141630 GGTCGGCAACGAACTCGATGTACGTCTTCATGAGGTCAGCGTTCATACCGAGAAGGGCAC 141689 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | || || || || | |||| |||||||||| | ||||| || | ||| | | Sbjct 141690 AGGGCAGGGCCTCGGTAAGGAACTCCTTCTCAATAGCGACAGCATCGGTGATGATTTCCT 141749 Query 129966 GAATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 130022 | || | | ||| ||| | | ||| | || | ||||| || |||||| | Sbjct 141750 GGATCAGTTGCTTGCTAGGGCGGTTGTTGAGGTGAGAGTACAAGAGG--CA-GGCAAAGT 141806 Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082 | ||| |||||||||||||| || || || ||||| || || ||| || ||||||| Sbjct 141807 CGGTGTGAAGACCCTCGTCACGAGAAATCAGCTCATTGGAAAAAGTCAGGCCAGGCATGA 141866 Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142 |||| ||||| ||||||||| || | ||| | || ||||||||||| ||||| | Sbjct 141867 GACCACGCTTGCGCAACCAGAAGATGGAGGCAAAGGCACCGGAGAAGAAGATACCCTCGA 141926 Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTC 130201 | ||| || |||| ||| |||| |||||||| | | | |||| ||| ||||||| Sbjct 141927 CGGCCGCAAAAGCAACGAGGCGCTGAGCAAAGGTG-GATTCCTTGTCGGCAATCCACTTC 141985 Query 130202 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCC 130261 | ||||| | ||||| || || || | ||| | || || | |||||| | Sbjct 141986 AGGGCCCAATCGGCCTTGCGGCGAATGCAGGGAATGGTGTCAATGGCGTTAAAGAGATAA 142045 Query 130262 TTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGG 130321 | | | || || |||||||| |||| || || || || || || || Sbjct 142046 GTGCGCTGGGCGGGCTCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGTCTCAGAGTGA 142105 Query 130322 ACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC 130380 | | | ||| || | ||| | ||||||| |||| || ||| | ||| ||||| Sbjct 142106 ATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAACCTGAACCTC 142164 Query 130381 ATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 130440 | | | ||| | | | ||||| ||||| ||||| || ||||||| || || Sbjct 142165 AGCGGAAAAGCGCTCAACAAGGTTCTCGTTCACAATGCCATCAGAAGCAGCAAAGAAAGC 142224 Query 130441 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAG 130497 || || | || || ||| |||| || ||||| || | |||||||||| ||| Sbjct 142225 GAGAATGTGAGAGATAAAGAACTGCTCATCCTTGTTCATGCGGTTGTTCCAGTCGTGAAG 142284 Query 130498 ATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||| || ||||| | |||||| |||||||| Sbjct 142285 ATCCTTAGACAGATCAATCTCCTCAGCAGTCCA 142317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618430221596640