Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq46 161 1e-34
>seq46
Length=146035
Score = 161 bits (178), Expect = 1e-34
Identities = 532/813 (65%), Gaps = 17/813 (2%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGA-TATTCTCCAT 129786
|| || ||||| ||||||||||||||||| ||||| || |||||| | | ||||||||
Sbjct 141512 TAATCACCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCA-CCAAGCGAAATGTTCTCCAT 141570
Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGAC 129845
|| || || ||||| | || | | | || | |||| ||| ||||
Sbjct 141571 GAAGTCGAAGGGGTTGGAAGCCTTGTAGACCTTCTCGTTA-CCAAGGGCAACGAGAAGAC 141629
Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905
| || | ||| |||| |||||| ||| || | ||||||||||| ||| ||
Sbjct 141630 GGTCGGCAACGAACTCGATGTACGTCTTCATGAGGTCAGCGTTCATACCGAGAAGGGCAC 141689
Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965
| || || || || | |||| |||||||||| | ||||| || | ||| | |
Sbjct 141690 AGGGCAGGGCCTCGGTAAGGAACTCCTTCTCAATAGCGACAGCATCGGTGATGATTTCCT 141749
Query 129966 GAATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 130022
| || | | ||| ||| | | ||| | || | ||||| || |||||| |
Sbjct 141750 GGATCAGTTGCTTGCTAGGGCGGTTGTTGAGGTGAGAGTACAAGAGG--CA-GGCAAAGT 141806
Query 130023 CCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 130082
| ||| |||||||||||||| || || || ||||| || || ||| || |||||||
Sbjct 141807 CGGTGTGAAGACCCTCGTCACGAGAAATCAGCTCATTGGAAAAAGTCAGGCCAGGCATGA 141866
Query 130083 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 130142
|||| ||||| ||||||||| || | ||| | || ||||||||||| ||||| |
Sbjct 141867 GACCACGCTTGCGCAACCAGAAGATGGAGGCAAAGGCACCGGAGAAGAAGATACCCTCGA 141926
Query 130143 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTC 130201
| ||| || |||| ||| |||| |||||||| | | | |||| ||| |||||||
Sbjct 141927 CGGCCGCAAAAGCAACGAGGCGCTGAGCAAAGGTG-GATTCCTTGTCGGCAATCCACTTC 141985
Query 130202 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCC 130261
| ||||| | ||||| || || || | ||| | || || | |||||| |
Sbjct 141986 AGGGCCCAATCGGCCTTGCGGCGAATGCAGGGAATGGTGTCAATGGCGTTAAAGAGATAA 142045
Query 130262 TTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGG 130321
| | | || || |||||||| |||| || || || || || || ||
Sbjct 142046 GTGCGCTGGGCGGGCTCCTTGATGTAAGTATCAATCAGCAGGGAGTAGGTCTCAGAGTGA 142105
Query 130322 ACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC 130380
| | | ||| || | ||| | ||||||| |||| || ||| | ||| |||||
Sbjct 142106 ATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGAACCTGAACCTC 142164
Query 130381 ATCTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 130440
| | | ||| | | | ||||| ||||| ||||| || ||||||| || ||
Sbjct 142165 AGCGGAAAAGCGCTCAACAAGGTTCTCGTTCACAATGCCATCAGAAGCAGCAAAGAAAGC 142224
Query 130441 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAG 130497
|| || | || || ||| |||| || ||||| || | |||||||||| |||
Sbjct 142225 GAGAATGTGAGAGATAAAGAACTGCTCATCCTTGTTCATGCGGTTGTTCCAGTCGTGAAG 142284
Query 130498 ATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530
|||||| || ||||| | |||||| ||||||||
Sbjct 142285 ATCCTTAGACAGATCAATCTCCTCAGCAGTCCA 142317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618430221596640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |