Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq13 91.5 9e-14
>seq13
Length=240985
Score = 91.5 bits (100), Expect = 9e-14
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||| ||||||||| |||||| |||||||| || || || || || ||
Sbjct 37952 AGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGA 37893
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || ||||| || || || |||||||| | ||||| |||||||| || | ||||||
Sbjct 37892 CCATCCTCAAGCTGCTTTCCAGCAAATATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCC 37833
Query 34609 TTGTC 34613
|||||
Sbjct 37832 TTGTC 37828
Score = 91.5 bits (100), Expect = 9e-14
Identities = 146/208 (70%), Gaps = 10/208 (5%)
Strand=Plus/Minus
Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563
||||||||| ||||| || ||||| ||||| ||||| || || | || ||||| ||
Sbjct 38165 TGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGGGTACGGCCATCCTCAAGCTGC 38106
Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT- 34622
|| |||||||| || | ||||| |||||||| || | ||||||||||| ||||||
Sbjct 38105 TTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTG 38046
Query 34623 ---TTGTT-TTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTAC 34678
||| || ||||| ||||| ||| || |||| ||| || || || |
Sbjct 38045 GACTTGACATTGTCGATA-----GTGTCGGAAGACTCAACCTCCAAGGTAATGGTCTTTC 37991
Query 34679 CGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || | || || || |||||||||||
Sbjct 37990 CAGTCAGAGTCTTGACGAAAATCTGCAT 37963
Score = 86.0 bits (94), Expect = 4e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| ||||||||| ||||| |||||||| || || || || || ||
Sbjct 38636 AGACGAAGAACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGA 38577
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || ||||| || || || ||||| || | ||||| |||||||| || | ||||||
Sbjct 38576 CCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCC 38517
Query 34609 TTGTC 34613
|||||
Sbjct 38516 TTGTC 38512
Score = 82.4 bits (90), Expect = 5e-11
Identities = 151/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||| || | |||| |||||| || ||||| || || || || || ||
Sbjct 38408 AGACGAAGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGT 38349
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || ||||| || ||||| || || || | ||||||||| ||||| || | ||||||
Sbjct 38348 CCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGATCCGGGGGAATGCCCTCC 38289
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| || | || ||| | ||| || || ||| || |||| |||
Sbjct 38288 TTGTC-CTGAATCTTCGACTTCACGTTGTCAATGGTATCAGAAGACTCGACCTCCAAGGT 38230
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || ||||| || | || || || || ||||||||
Sbjct 38229 AATAGTCTTACCAGTGAGGGTCTTGACGAAGATCTGCAT 38191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314727129766052
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |