Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq13 91.5 9e-14 >seq13 Length=240985 Score = 91.5 bits (100), Expect = 9e-14 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||||||||| |||||| |||||||| || || || || || || Sbjct 37952 AGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGA 37893 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || |||||||| | ||||| |||||||| || | |||||| Sbjct 37892 CCATCCTCAAGCTGCTTTCCAGCAAATATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCC 37833 Query 34609 TTGTC 34613 ||||| Sbjct 37832 TTGTC 37828 Score = 91.5 bits (100), Expect = 9e-14 Identities = 146/208 (70%), Gaps = 10/208 (5%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||| ||||| || ||||| ||||| ||||| || || | || ||||| || Sbjct 38165 TGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGGGTACGGCCATCCTCAAGCTGC 38106 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT- 34622 || |||||||| || | ||||| |||||||| || | ||||||||||| |||||| Sbjct 38105 TTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTG 38046 Query 34623 ---TTGTT-TTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTAC 34678 ||| || ||||| ||||| ||| || |||| ||| || || || | Sbjct 38045 GACTTGACATTGTCGATA-----GTGTCGGAAGACTCAACCTCCAAGGTAATGGTCTTTC 37991 Query 34679 CGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || ||||||||||| Sbjct 37990 CAGTCAGAGTCTTGACGAAAATCTGCAT 37963 Score = 86.0 bits (94), Expect = 4e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||||||| ||||| |||||||| || || || || || || Sbjct 38636 AGACGAAGAACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGA 38577 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || ||||| || | ||||| |||||||| || | |||||| Sbjct 38576 CCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCC 38517 Query 34609 TTGTC 34613 ||||| Sbjct 38516 TTGTC 38512 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| || | |||| |||||| || ||||| || || || || || || Sbjct 38408 AGACGAAGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGT 38349 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || ||||| || || || | ||||||||| ||||| || | |||||| Sbjct 38348 CCATCCTCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGATCCGGGGGAATGCCCTCC 38289 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | || ||| | ||| || || ||| || |||| ||| Sbjct 38288 TTGTC-CTGAATCTTCGACTTCACGTTGTCAATGGTATCAGAAGACTCGACCTCCAAGGT 38230 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| || | || || || || |||||||| Sbjct 38229 AATAGTCTTACCAGTGAGGGTCTTGACGAAGATCTGCAT 38191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727129766052