Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq13 105 6e-18
seq157 82.4 7e-11
>seq13
Length=240985
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || || ||| | |||||||||||||| || | ||
Sbjct 38419 ATGCAGATTTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTTGAAGTTGAGTCTTCT 38478
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | ||||| || ||||| ||||| || ||||| || || || ||
Sbjct 38479 GATACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAG 38538
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | || || || || | || || || || | ||||| ||||||
Sbjct 38539 CAGCGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTCTGTCCGACTACAAC 38598
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
||||| ||||| || || | || |||||| | ||| | || ||||||
Sbjct 38599 ATTCAGAAGGAATCCACTCTCCACTTGGTTCTTCGTCTCCGTGGTGGC 38646
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || |||||||| || ||| | ||||| | || || || | |||
Sbjct 37963 ATGCAGATTTTCGTCAAGACTCTGACTGGAAAGACCATTACCTTGGAGGTTGAGTCTTCC 38022
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || || || ||||| || ||||| || || || ||
Sbjct 38023 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 38082
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | |||||||| || | || || | ||| ||||||||||||||
Sbjct 38083 CAGCGCCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTTCCGATTACAAC 38142
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || ||||| || || | || | || | ||| | || ||||| ||
Sbjct 38143 ATCCAGAAGGAATCCACTCTCCACCTTGTCCTTCGTCTCCGTGGTGGTAT 38192
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || || ||| ||||||| | || || || | ||
Sbjct 38191 ATGCAGATCTTCGTCAAGACCCTCACTGGTAAGACTATTACCTTGGAGGTCGAGTCTTCT 38250
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || || || ||||| ||||| || ||||| || || ||||||
Sbjct 38251 GATACCATTGACAACGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAA 38310
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | ||| || || || | || || | || | || || ||||||
Sbjct 38311 CAGCGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGACGTACTCTCTCTGACTACAAC 38370
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||||| || || || ||||| | ||| | || ||||| ||
Sbjct 38371 ATCCAGAAGGAGTCCACTTTGCACCTGGTTCTTCGTCTCCGTGGTGGTAT 38420
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071
||||||||| | || || || || || || | |||||| | || || | |||||
Sbjct 37759 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAACGTCAAGTCC 37818
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| ||||| ||||| || ||||| || || || || ||||| | |||| || || ||
Sbjct 37819 AAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGCCTGATATTTGCTGGAAAG 37878
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
|| | || || || || | ||||| ||||||||||| |||||||| || | ||
Sbjct 37879 CAGCTTGAGGATGGTCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCCACTCTCCAC 37938
Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||| | ||| | || ||||| ||
Sbjct 37939 CTGGTCCTCCGTCTCCGTGGTGGTAT 37964
>seq157
Length=65766
Score = 82.4 bits (90), Expect = 7e-11
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || || || ||| | ||||| || || || || | ||
Sbjct 44951 ATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTCG 45010
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || || || || || || ||||| || || |||||
Sbjct 45011 GACACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGATCAG 45070
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | || | || ||||| || |||| || | ||| |||| || ||||||
Sbjct 45071 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTACAAC 45130
Query 27168 ATTCAAAAGG 27177
||||| ||||
Sbjct 45131 ATTCAGAAGG 45140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434914898906880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |