Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq13 118 2e-21
seq3 104 5e-17
>seq13
Length=240985
Score = 118 bits (130), Expect = 2e-21
Identities = 154/210 (73%), Gaps = 5/210 (2%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||| || || || || |||||||| |||| | ||| | ||||| || |
Sbjct 38625 CAAG-TGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCATCCTCAA 38567
Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
| ||||| || || ||||| || | ||||||||||| | || || ||||| || ||
Sbjct 38566 GCTGCTTT--CCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 38509
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
||| || |||||| | || | | | || ||| ||| |||||||||||||| || ||
Sbjct 38508 AATCTTGGACTTGACATTGTCAATGGTATCAGAAGACTCAACTTCAAGAGTAATGGTCTT 38449
Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| ||||| ||||| | ||||||
Sbjct 38448 TCCAGTGAGGGTCTTGACGAAAATCTGCAT 38419
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|||||||| || ||||| || || || |||||||||||||||| | || | |||||
Sbjct 38174 AGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAAAGGGTACGGCCATCC 38115
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||| ||||| || | ||||||||||| | || || ||||| ||
Sbjct 38114 TCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 38055
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || |||||| | || | |||| ||| ||| || || | ||||| ||
Sbjct 38054 TGGATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCCAAGGTAATGGTC 37995
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || |||||||| ||||| | ||||||
Sbjct 37994 TTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 37963
Score = 89.7 bits (98), Expect = 1e-12
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || || || | ||| ||||| || ||||||||||| || | | ||| | |||||
Sbjct 38402 AGAACCAGGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTACGTCCATCC 38343
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || ||||| || || | ||| || |||| | || || ||||| ||
Sbjct 38342 TCAAGCTGCTTACCAGCGAAAATGAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCC 38283
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || || || | || | | | || ||| ||| || || | ||||||||
Sbjct 38282 TGAATCTTCGACTTCACGTTGTCAATGGTATCAGAAGACTCGACCTCCAAGGTAATAGTC 38223
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||| ||||| ||||||| ||||||
Sbjct 38222 TTACCAGTGAGGGTCTTGACGAAGATCTGCAT 38191
Score = 84.2 bits (92), Expect = 5e-11
Identities = 139/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| || || ||||| ||||| || || |||||||| |||| | ||| |
Sbjct 37953 GAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCG 37894
Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
||||| || || ||||| || || || || || | ||||||||||| | || ||
Sbjct 37893 ACCATCCTCAAGCTGCTTT--CCAGCAAATATCAGGCGCTGCTGGTCCGGAGGAATGCCC 37836
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
||||| || ||||| || ||||| | || | |||| || ||| || || ||
Sbjct 37835 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTCAACCTCGAGG 37776
Query 152064 GTAATAGTTTTGCCCGTGA 152082
|| || || ||||| ||||
Sbjct 37775 GTGATGGTCTTGCCGGTGA 37757
>seq3
Length=407529
Score = 104 bits (114), Expect = 5e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | |||||| || || ||||| ||||| || ||||||||||| || | | ||| |
Sbjct 21584 GAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCG 21525
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || || |||||||| || | ||||||||||| | || || ||
Sbjct 21524 GCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTC 21465
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || || || ||||| | || | |||| ||| ||| || || || ||
Sbjct 21464 CTTATCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGT 21405
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095
||| || || ||||| || ||||| |||||
Sbjct 21404 AATGGTCTTACCCGTCAGGGTCTTGACGAA 21375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153811279536124
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