Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09] 644 sequences; 28,339,215 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq13 150 4e-31 seq3 123 6e-23 seq157 118 3e-21 >seq13 Length=240985 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || ||||| || || ||| | ||||| || || ||| Sbjct 37966 CAGATTTTCGTCAAGACTCTGACTGGAAAGACCATTACCTTGGAGGTTGAGTCTTCCGAC 38025 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||| |||||||| || || || |||||||||||||| Sbjct 38026 ACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAG 38085 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || ||||| | || ||| ||||||| ||| || Sbjct 38086 CGCCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTTCCGATTACAACATC 38145 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || || ||||| Sbjct 38146 CAGAAGGAATCCACTCTCCACCTTGT 38171 Score = 134 bits (148), Expect = 3e-26 Identities = 142/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||||||||| || ||| ||||| ||||| |||||||| Sbjct 37757 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAACGTCAAGT 37816 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||||||||||| || || || |||||||||||||| || || || || || |||| Sbjct 37817 CCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGCCTGATATTTGCTGGAA 37876 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || ||||| | ||||| |||| || ||| | || || || || || || | Sbjct 37877 AGCAGCTTGAGGATGGTCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCCACTCTCC 37936 Query 178123 ATCTTGT 178129 | || || Sbjct 37937 ACCTGGT 37943 Score = 129 bits (142), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| ||||| || || || || || || || || || Sbjct 38422 CAGATTTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTTGAAGTTGAGTCTTCTGAT 38481 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| |||||||||||||| || || || || ||||||||||| Sbjct 38482 ACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 38541 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || ||||| ||||| || ||||| | ||||| |||| || ||| | Sbjct 38542 CGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTCTGTCCGACTACAACATT 38601 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || ||||| || || || |||| || Sbjct 38602 CAGAAGGAATCCACTCTCCA-CTTGGTT 38628 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || || ||| | ||||| || || || Sbjct 38194 CAGATCTTCGTCAAGACCCTCACTGGTAAGACTATTACCTTGGAGGTCGAGTCTTCTGAT 38253 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || |||||||||||||| || || || || ||||| || || Sbjct 38254 ACCATTGACAACGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAACAG 38313 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| || |||||| | ||||| | || || ||| || Sbjct 38314 CGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGACGTACTCTCTCTGACTACAACATC 38373 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || |||| || ||| Sbjct 38374 CAGAAGGAGTCCACTTTGCACCTGGTT 38400 >seq3 Length=407529 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||||| || || || || || || || || ||||| ||||| || || ||||| || Sbjct 21374 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGAT 21433 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| |||||||| ||||| ||||| || || || || || ||||||||||| || || Sbjct 21434 CGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 21493 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || |||||||| ||||| | ||||| | || || ||| |||| || Sbjct 21494 GATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCTGACTACAACATCCAGAA 21553 Query 178109 AGAATCAACACTGCATCTTGT 178129 || || || || || || || Sbjct 21554 GGAGTCCACTCTCCACCTGGT 21574 >seq157 Length=65766 Score = 118 bits (130), Expect = 3e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || ||||| ||||||||||| || ||| ||| Sbjct 44954 CAGATTTTCGTTAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTCGGAC 45013 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| ||||| || || || || || ||||| ||||| Sbjct 45014 ACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGATCAGCAG 45073 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || ||||| | || ||| | || || ||| | Sbjct 45074 CGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTACAACATT 45133 Query 178104 CAAAA 178108 || || Sbjct 45134 CAGAA 45138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203721267712936