Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq13 150 4e-31
seq3 123 6e-23
seq157 118 3e-21
>seq13
Length=240985
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || ||||| || ||||| || || ||| | ||||| || || |||
Sbjct 37966 CAGATTTTCGTCAAGACTCTGACTGGAAAGACCATTACCTTGGAGGTTGAGTCTTCCGAC 38025
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || ||||| ||||| |||||||| || || || ||||||||||||||
Sbjct 38026 ACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAG 38085
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| ||||| || ||||| || ||||| | || ||| ||||||| ||| ||
Sbjct 38086 CGCCTGATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGTACCCTTTCCGATTACAACATC 38145
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||| || || || |||||
Sbjct 38146 CAGAAGGAATCCACTCTCCACCTTGT 38171
Score = 134 bits (148), Expect = 3e-26
Identities = 142/187 (76%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || |||||||||||||| || ||| ||||| ||||| ||||||||
Sbjct 37757 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGACACTATCGACAACGTCAAGT 37816
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
|||||||||||||| || || || |||||||||||||| || || || || || ||||
Sbjct 37817 CCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGCCTGATATTTGCTGGAA 37876
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| ||||| || ||||| | ||||| |||| || ||| | || || || || || || |
Sbjct 37877 AGCAGCTTGAGGATGGTCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCCACTCTCC 37936
Query 178123 ATCTTGT 178129
| || ||
Sbjct 37937 ACCTGGT 37943
Score = 129 bits (142), Expect = 1e-24
Identities = 154/208 (74%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| ||||| || || || || || || || || ||
Sbjct 38422 CAGATTTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTTGAAGTTGAGTCTTCTGAT 38481
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| |||||||||||||| || || || || |||||||||||
Sbjct 38482 ACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 38541
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || ||||| ||||| || ||||| | ||||| |||| || ||| |
Sbjct 38542 CGCCTGATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTCTGTCCGACTACAACATT 38601
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
|| || ||||| || || || |||| ||
Sbjct 38602 CAGAAGGAATCCACTCTCCA-CTTGGTT 38628
Score = 113 bits (124), Expect = 1e-19
Identities = 149/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || || ||| | ||||| || || ||
Sbjct 38194 CAGATCTTCGTCAAGACCCTCACTGGTAAGACTATTACCTTGGAGGTCGAGTCTTCTGAT 38253
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||| || |||||||||||||| || || || || ||||| || ||
Sbjct 38254 ACCATTGACAACGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAACAG 38313
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || ||||| || |||||| | ||||| | || || ||| ||
Sbjct 38314 CGTCTCATTTTCGCTGGTAAGCAGCTTGAGGATGGACGTACTCTCTCTGACTACAACATC 38373
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| || || || || |||| || |||
Sbjct 38374 CAGAAGGAGTCCACTTTGCACCTGGTT 38400
>seq3
Length=407529
Score = 123 bits (136), Expect = 6e-23
Identities = 148/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
|||||| || || || || || || || || ||||| ||||| || || ||||| ||
Sbjct 21374 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGAT 21433
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| |||||||| ||||| ||||| || || || || || ||||||||||| || ||
Sbjct 21434 CGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGCGCCT 21493
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||| || || |||||||| ||||| | ||||| | || || ||| |||| ||
Sbjct 21494 GATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACTCTCTCTGACTACAACATCCAGAA 21553
Query 178109 AGAATCAACACTGCATCTTGT 178129
|| || || || || || ||
Sbjct 21554 GGAGTCCACTCTCCACCTGGT 21574
>seq157
Length=65766
Score = 118 bits (130), Expect = 3e-21
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || || || || || ||||| ||||||||||| || ||| |||
Sbjct 44954 CAGATTTTCGTTAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTCGGAC 45013
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| ||||| || || || || || ||||| |||||
Sbjct 45014 ACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGATCAGCAG 45073
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || || || ||||| || ||||| | || ||| | || || ||| |
Sbjct 45074 CGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTACAACATT 45133
Query 178104 CAAAA 178108
|| ||
Sbjct 45134 CAGAA 45138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203721267712936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |