Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20adiposa_20[genbank_20GCA_5F001640685.1_202016-05-09]
644 sequences; 28,339,215 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq3 156 4e-33
seq13 150 2e-31
seq157 134 1e-26
>seq3
Length=407529
Score = 156 bits (172), Expect = 4e-33
Identities = 174/229 (76%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| || || ||| ||||||||| ||||| ||||| |||
Sbjct 21592 CCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 21533
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || |||||||||||||| ||||| ||||||||||| ||||||| ||||
Sbjct 21532 AGAGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 21473
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||| ||| ||| || ||| ||| | | | ||||| ||||| ||
Sbjct 21472 ATGCCCTCCTTATCCTGGATCTTGGACTT-GACGTTGTCGATCGTGTCCGAAGACTCGAC 21414
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| || || || ||||||||||| ||||| |||||| |||||||
Sbjct 21413 CTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA--CTGCATG 21367
>seq13
Length=240985
Score = 150 bits (166), Expect = 2e-31
Identities = 172/229 (75%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || ||| |||||||| ||||| || |||||
Sbjct 38189 CCACCACGGAGACGAAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGAA 38130
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || |||||||||||||| || ||||||||||| ||||||| |||
Sbjct 38129 AGGGTACGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGA 38070
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| ||| || ||| || | || | ||||||| ||||| |
Sbjct 38069 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATAGTGTCGGAAGACTCAA 38012
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| || || || || || ||||| ||||| ||||||||||||||
Sbjct 38011 CCTCCAAGGTAATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 37963
Score = 127 bits (140), Expect = 2e-24
Identities = 152/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || ||| ||||||||||||||| ||||||||
Sbjct 37961 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 37902
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || |||||||| || || |||||||||||||| ||||||| |||
Sbjct 37901 AGAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAATATCAGGCGCTGCTGGTCCGGAGGA 37842
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| | || | | ||| | | | ||||||| ||||| ||
Sbjct 37841 ATGCCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAGGACTCAAC 37783
Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838
||| | || || || || || ||
Sbjct 37782 CTCGAGGGTGATGGTCTTGCCGGT 37759
Score = 127 bits (140), Expect = 2e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | |||| || || ||| |||||||||||||| ||||||||
Sbjct 38646 GCCACCACGGAGACGAAGAACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGA 38587
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || |||||||| || || || ||||||||||| ||||||| |||
Sbjct 38586 CAGAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGG 38527
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
|| || |||||||||| ||| | || | | || | | | || || ||||| |
Sbjct 38526 AATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTGTCAATGGTATCAGAAGACTCAA 38468
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| || | || || || || || || || ||||| ||||||||||||||
Sbjct 38467 CTTCAAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAAATCTGCAT 38419
>seq157
Length=65766
Score = 134 bits (148), Expect = 1e-26
Identities = 148/195 (76%), Gaps = 4/195 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||||||||| ||||| || |||||||| | || || ||||||||||| || || |
Sbjct 45140 CCTTCTGAATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 45081
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
|||| ||||| || |||| ||||| || |||||| ||| ||| || ||| || |
Sbjct 45080 TCAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGT 45021
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | ||||| ||||| ||||| | || ||||| |||||||| || ||||| ||
Sbjct 45020 CG--ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTAAC 44963
Query 41851 GAAAATCTGCATGTT 41865
|||||||||||| ||
Sbjct 44962 GAAAATCTGCATCTT 44948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462300278452800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |