Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq539 136 5e-27
>seq539
Length=40911
Score = 136 bits (150), Expect = 5e-27
Identities = 617/973 (63%), Gaps = 20/973 (2%)
Strand=Plus/Plus
Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769
|||||| || || || || || ||||| | || | ||| | || |||||||||||
Sbjct 17075 AGATGCTAGGTTGCACACAGCAACCTCGTCAGGGGCACAATACTCGATAATCTCAGTGCA 17134
Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829
|| || | |||||| |||| ||||| ||||| ||||| ||| || ||
Sbjct 17135 CAGGTTTGAGCTGCGGATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAATGGTC 17194
Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889
|| ||||| ||||| || | ||||| ||| |||||| || | ||| || | ||| |
Sbjct 17195 TTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGGGCCTCCAGAATGGCATACCACAG 17254
Query 53890 GACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGT--ATACAAT 53947
| ||||| | | | | | | | ||| ||| || | | |||||
Sbjct 17255 CTTCTGGGCCTTGACAACCG--TGCGACCGCGACCCTCCTTCTCGTACTTTTCATACAGA 17312
Query 53948 CGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAAC 54007
|||||||| || || | || |||| || || ||||||| || ||||| |
Sbjct 17313 GCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCACATGAGA 17372
Query 54008 GACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067
| ||| || | | | || || || ||||| || | || ||||| || || |
Sbjct 17373 GTCCAGTCCTCATTTTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGGCCAAG 17432
Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127
||||| || | | | ||| || ||||| ||||| | ||||||||| |
Sbjct 17433 AATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGCAAGTCGAGGAACTCG 17492
Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187
| | ||||| |||||| || || | ||| |||| | ||||||| || ||||||||
Sbjct 17493 AAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCA 17552
Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247
||||| || | || | || ||||| || |||| | | ||| |||| ||||| ||
Sbjct 17553 CCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGATACCGTTC 17612
Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--TTACTAATTGATA 54305
|| | ||| || || || | || || ||| ||||||||||| | |||| |
Sbjct 17613 GAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGGACATTG--A 17670
Query 54306 GACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 54365
|||| || || || ||||| || || || | || || || | ||||| || ||||
Sbjct 17671 GACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGC 17730
Query 54366 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 54425
|||| || || ||||| |||||| | ||| || || ||||| || | |
Sbjct 17731 CCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGAGCCTGGGGGG 17790
Query 54426 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 54485
| || |||||||| | ||||| || ||||| || || | || || | | ||||
Sbjct 17791 TACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGGACATAAAGTTGT 17850
Query 54486 ACGTCTC---GATAGCTGAGTCTAT---ATCCCATTGATGAATTCCTACTGCGACACGCA 54539
| || || | | | | || | | |||| ||| || || || |||||||
Sbjct 17851 AGGTTTCAAGCACACGTTCGACTTTGTCACCCCA------AATACCCACAGCAACACGCA 17904
Query 54540 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTT 54599
||| ||||||||| || | |||||| ||||| | | |||||| | ||| || |
Sbjct 17905 TTATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTAGGTAAGAACGCT 17964
Query 54600 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGT 54659
| | ||| ||||| ||||| || | ||| ||||| || ||||| | || | ||||
Sbjct 17965 CAAGAGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATGGCAGAGT 18024
Query 54660 TGAGTTTATCCTT 54672
|| | ||||||
Sbjct 18025 CCAGCTCATCCTT 18037
Score = 93.3 bits (102), Expect = 5e-14
Identities = 204/305 (67%), Gaps = 3/305 (1%)
Strand=Plus/Plus
Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867
|||||||| || || || | || | | |||||| || |||||||| ||||| || |||
Sbjct 16164 GTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGA 16223
Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927
|| || |||| ||| ||| ||||| || || | ||| | |||||| ||
Sbjct 16224 CCTAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGATCTTTCATG 16283
Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987
|| || || | ||| || ||| || ||||| || || | ||| |||||||||| |
Sbjct 16284 TGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCAGCCATTTGCACA 16343
Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047
| || || | ||||||||||| || || || | |||||||| | |||| |
Sbjct 16344 ACTGTACGCTGGGAAATTTCCCAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATG 16403
Query 53048 TTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104
| | | ||||||||||||||| || | ||||| | ||||| || | ||| |
Sbjct 16404 CTAGGGATGTTCTGAATAGATCCATTGTCCGCAATAATGCGGTTCTTCATATTGTCAGAC 16463
Query 53105 CATAA 53109
|||||
Sbjct 16464 CATAA 16468
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593711172764400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |