Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq576 107 2e-18
seq1207 100 2e-16
seq492 96.9 3e-15
>seq576
Length=37320
Score = 107 bits (118), Expect = 2e-18
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | || |||| || | ||| || ||||| || ||||| ||||| | |
Sbjct 12479 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAC 12420
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || ||||||| ||||| || || ||| |||| || | |||||| ||| ||
Sbjct 12419 AGGGTGCGGCCGTCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCCGGAGGG 12360
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || ||||| || |||||| || || | | ||| |||||| || ||| |
Sbjct 12359 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGACTCGACT 12300
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165
|| | ||| |||||||||||||| | || |||||||
Sbjct 12299 TCGAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACAA 12263
Score = 105 bits (116), Expect = 6e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||| | ||| | ||| |||||||| || ||||| ||||| | |
Sbjct 12195 CCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAC 12136
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || | ||||| ||||| || || || |||| || | |||||||||| ||
Sbjct 12135 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGA 12076
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| |||||| || || | | | | |||||| | ||||
Sbjct 12075 ATACCCTCCTTGTCCTGGATCTTAGACTTAACGTTGTCAATAGTATCCGAAGACTCCACC 12016
Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151
|| | ||| ||||||||||||||
Sbjct 12015 TCGAGGGTGATGGTCTTGCCGGT 11993
>seq1207
Length=77990
Score = 100 bits (110), Expect = 2e-16
Identities = 139/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045
|||| |||||||| ||||| | |||||| || | ||||||||||| ||||| || | |
Sbjct 69259 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 69200
Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105
| || | |||||||||| ||| | ||| |||||||| ||||| || || | |
Sbjct 69199 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGT 69140
Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165
||| ||| || || ||| || | |||||| ||||| || || | || ||||| |
Sbjct 69139 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGA 69080
Query 21166 ATATTTGCATTTTGA 21180
| || ||||| ||||
Sbjct 69079 AAATCTGCATCTTGA 69065
>seq492
Length=47418
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | || || | || | |||||||||||| || ||||| ||||| | |
Sbjct 44767 CCACCACGCAGGCGCAGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 44708
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | ||||| ||||| ||||| ||| | || | | |||||||||| |||
Sbjct 44707 AGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGA 44648
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| |||||| || || | | ||| || || | |||
Sbjct 44647 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 44588
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAA 21166
|||| |||||||||||| || || | || ||||| ||
Sbjct 44587 TCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 44550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422251969470980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |