Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq431 295 7e-75 seq1207 118 1e-21 seq492 118 1e-21 seq576 109 6e-19 >seq431 Length=155802 Score = 295 bits (326), Expect = 7e-75 Identities = 516/739 (70%), Gaps = 19/739 (3%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | || ||| | || || Sbjct 43634 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAAGAGATTGATCTC 43693 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | || ||||| | |||||| | |||||| Sbjct 43694 TCCAAGGATCTCCA-CGACTGGAACAACCGTCTGAACAAGGACGAGCAGTACTTCATCTC 43752 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || ||||| || || ||| || |||||||||||||| || || || ||||| Sbjct 43753 CCACATTCTCGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAACCTCGTTGAGCG 43812 Query 116812 TTTCGCTCAG--GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCC 116869 || ||||| ||||||||| | ||||||| |||||||||||||| || |||||| Sbjct 43813 CTT--CTCAGGCGAGGTGCAGATTCCCGAGGCCCGGTGCTTCTACGGTTTCCAGATCATG 43870 Query 116870 ATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTC 116925 ||||| ||| | || || |||| |||||| || || ||||| ||| | | || | Sbjct 43871 ATGGAAAACATCCATTCTGAAACCTATTCGCTGCTAATTGACACCTACATCAAGGAGC-C 43929 Query 116926 TTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAA 116985 ||| | | | | | | | || || ||||| || || || || ||| || || Sbjct 43930 CTCGCA-GCGCACATAC--CTATTCAATGCCATTGACACTATTCCCTGCATCCGTCGCAA 43986 Query 116986 GGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGT 117045 |||||| ||||| ||| |||||| ||| || ||| | | || | | ||||||| || Sbjct 43987 GGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCTACGTTTGCCCAGCGCCTAGT 44046 Query 117046 GGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCT 117105 ||||| || || ||||||||| |||| || ||||| |||||| |||| || ||||| Sbjct 44047 TGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCGGGTGCCTTCGCCTCCATCTTCTGGCT 44106 Query 117106 CAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 || || || |||||||| || ||||| ||| ||||||||||| || | ||||| Sbjct 44107 GCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTCATTTCTCGTGACGA 44166 Query 117166 GGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGC 117225 ||| ||||| ||||||||| || |||||||| ||| | | || || ||| Sbjct 44167 GGGCCTGCACACCGACTTTGCTTGCCTGCTGTTCTCGCACCTAAACAACCGCCCCAGCAA 44226 Query 117226 GGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGA 117285 || | || ||||| |||| || || || | |||||| || ||||| ||||| Sbjct 44227 GGACCTAGTGCAAAAGATCATCACTGATGCCGTTGTGATCGAGAAGGAGTTCCTGACCGA 44286 Query 117286 AGCGCTGCCGGTGC-GTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGT 117344 || || || ||| ||||||| ||| | || ||| |||| ||| ||||| |||| Sbjct 44287 GGCTCTTCC-CTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAGCAGTACATTGAGT 44345 Query 117345 TCGTCGCCGACAGGCTGCT 117363 | || || ||| | ||||| Sbjct 44346 TTGTTGCGGACCGCCTGCT 44364 >seq1207 Length=77990 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || || || ||| |||| || || || Sbjct 69067 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 69126 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | ||||| || |||| ||||| |||||||| ||| ||||| Sbjct 69127 TCGGACACTATCGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 69186 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | |||||||| |||||| Sbjct 69187 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTAC 69246 Query 40867 AACATCCAGAAGG 40879 ||||| ||||||| Sbjct 69247 AACATTCAGAAGG 69259 >seq492 Length=47418 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| | | |||| | Sbjct 44550 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATC 44609 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| |||||||| ||| |||||||||| || | Sbjct 44610 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTT 44668 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| || ||||| ||||| || || | ||||| || |||||||||||||||||| Sbjct 44669 GATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 44728 Query 40878 GGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| |||| || || || || ||||| || | || || Sbjct 44729 GGAGTCCACTCTCCACCTTGTCCTGCGCCTGCGTGGTGG 44767 >seq576 Length=37320 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| ||||||||| |||| || || | | || | | | |||| | ||| Sbjct 11993 ACCGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGATACTATTGACAACGTT-AAGTC 12051 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| ||||| || || |||||||||| || ||||| | ||| || || Sbjct 12052 TAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAGCAGCGTCTCATTTTCGCCGGAAA 12111 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || || | |||||||| |||||||||||||||||||||| | || || || Sbjct 12112 GCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCTACTCTCCA 12171 Query 40893 TCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||| | ||| || | || || Sbjct 12172 TCTAGTGCTCCGCCTGCGTGGTGG 12195 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || |||||||| || || || |||| ||||| | | Sbjct 12709 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAGACTATTACACTCGAGGTCGAGTCTTCG 12768 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | ||||| || || | ||||| ||||| ||||| | |||||| Sbjct 12769 GATACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 12828 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || || || || || || || | ||||||||| ||||||||| Sbjct 12829 CAGCGTCTCATCTTTGCTGGAAAGCAACTCGAGGATGGTCGCACCCTCTCTGACTACAAC 12888 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| || ||| | || |||| || | || ||| Sbjct 12889 ATCCAGAAGGAATCCACTCTTCATTTGGTTCTGCGTCTGCGTGGTGGC 12936 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || |||||||| || || || |||| ||||| | | Sbjct 12481 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAGACTATTACACTCGAGGTCGAGTCTTCG 12540 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | ||||| || || | || || ||||| ||||| |||| ||| Sbjct 12541 GATACTATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCGGATCAG 12600 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || || || ||||| || |||| ||||||||| ||||||||| Sbjct 12601 CAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGACGGCCGCACCCTCTCTGACTACAAC 12660 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||| | || || ||| | || |||| Sbjct 12661 ATCCAGAAGGAATCTACTCTTCATTTGGTTCTGCG 12695 Score = 102 bits (112), Expect = 8e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAA 40761 || || || || || ||||| ||||||||| |||| ||||| || | || | | | | Sbjct 12265 GTCAAGACCCTTACCGGCAAGACCATCACCCTCGAAGTCGAGTCCTCTGATACCATCGAC 12324 Query 40762 ACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATC 40821 | ||||| || || | || || ||||| ||||| |||| ||||| || ||||| Sbjct 12325 AATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCTCCGGATCAGCAGCGTCTCATT 12384 Query 40822 TACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 | || || || ||||| || |||| |||||||| ||||||||||||||||||||| Sbjct 12385 TTTGCCGGAAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGA 12443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515210151462800