Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 118 9e-22
seq576 111 1e-19
seq492 102 7e-17
seq431 87.8 2e-12
>seq1207
Length=77990
Score = 118 bits (130), Expect = 9e-22
Identities = 139/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| ||||||||||| || || ||||| |||||| ||||| || |||||| ||||
Sbjct 69257 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 69198
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
|| |||||||| || || || |||||||||||||| ||| || || || | |||
Sbjct 69197 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCG 69138
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| ||||||| | ||| ||||||| ||| | ||| || || || || || || || |||
Sbjct 69137 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 69078
Query 118731 ATCTGCAT 118738
||||||||
Sbjct 69077 ATCTGCAT 69070
>seq576
Length=37320
Score = 111 bits (122), Expect = 1e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595
|||| |||||||| || || |||||||| ||| || ||||| |||||| |||||
Sbjct 12171 TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGC 12112
Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655
||||| ||| | |||||||||||||| || ||||| || ||||||||||| || ||
Sbjct 12111 TTTCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTA 12052
Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715
||||| | || | || |||| ||| ||||||| ||| | || |||||||||
Sbjct 12051 GACTTAACGTTGTCAATAGTATCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTC 11992
Query 118716 A 118716
|
Sbjct 11991 A 11991
Score = 111 bits (122), Expect = 1e-19
Identities = 144/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | ||||| || || || |||||||| ||| || ||||| |||||
Sbjct 12461 ACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 12402
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| ||||| || | ||||||||||||||||| ||||| || |||||||| ||
Sbjct 12401 AGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTATCCTGG 12342
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||| || | | |||||| |||| ||| | || |||
Sbjct 12341 ATCTTGGACTTGACATTGTCGATGGTATCAGAGGACTCGACTTCGAGGGTGATGGTCTTG 12282
Query 118710 CCGGTCAGAGTTTTTACAA 118728
||||| || || || ||||
Sbjct 12281 CCGGTAAGGGTCTTGACAA 12263
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
||||| || | ||||| || || || |||||||| || | ||||| |||||
Sbjct 12689 ACCAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCA 12630
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| |||||||| ||||||||||||||||||| ||||| || |||||||| ||
Sbjct 12629 AGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTATCCTGG 12570
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | || | || |||| ||||||||||| || | || |||
Sbjct 12569 ATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATAGTCTTG 12510
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||| || || ||||| || |||||
Sbjct 12509 CCCGTCAGGGTCTTGACAAAGATTTGCAT 12481
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
||||| || | || || || || || |||||||| || | ||||| |||||||
Sbjct 12917 ACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCCTCG 12858
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|| || |||||||| |||||||||||||||| || ||||| || |||||||||||
Sbjct 12857 AGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGG 12798
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | || | || |||| ||||||||||| || | || |||
Sbjct 12797 ATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATAGTCTTG 12738
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| ||||| || || ||||| || |||||
Sbjct 12737 CCCGTCAGGGTCTTGACAAAGATTTGCAT 12709
>seq492
Length=47418
Score = 102 bits (112), Expect = 7e-17
Identities = 140/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| || || |||||||| ||| || |||||| |||||| |||||
Sbjct 44744 GTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTG 44685
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| ||||| |||| | |||||||| || || || |||||||||||||| || ||
Sbjct 44684 CTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 44625
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| ||||||| ||||||||| | ||| | || || || ||
Sbjct 44624 GGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGT 44565
Query 118715 CAGAGTTTTTACAAAA 118730
||| || || || |||
Sbjct 44564 CAGGGTCTTGACGAAA 44549
>seq431
Length=155802
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/232 (69%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 45074 GAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGGTGGGA 45133
|| ||||| | ||||||| ||| || | | |||||||| ||| || | |||
Sbjct 44252 GATGCCGTTGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTTCCCTGCGGTCTGCTAGGA 44311
Query 45134 ATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCG----T 45189
|||||||| || |||||| |||||||||||||||| || || || || || | |
Sbjct 44312 ATGAACGCCGATCTGATGAAGCAGTACATTGAGTTTGTTGCGGACCGCCTGCTTGTTGCT 44371
Query 45190 CCAGTTAAAGTATCCCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAATAT 45249
| || || | | ||| ||||| | | ||||| ||||| || ||| | || ||
Sbjct 44372 CTAGGCAACGAA----AAGGTGTACCGTGCCACAAACCCCTTCGACTTCATGGAGAACAT 44427
Query 45250 TTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATACAAG 45301
||| | | ||||| ||||| || |||||||| || ||||| || ||| ||
Sbjct 44428 CTCGCTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCGGTGATTACCAG 44479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433822971332260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |