Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1207 118 9e-22 seq576 111 1e-19 seq492 102 7e-17 seq431 87.8 2e-12 >seq1207 Length=77990 Score = 118 bits (130), Expect = 9e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || ||||||||||| || || ||||| |||||| ||||| || |||||| |||| Sbjct 69257 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 69198 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || |||||||| || || || |||||||||||||| ||| || || || | ||| Sbjct 69197 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCG 69138 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | ||||||| | ||| ||||||| ||| | ||| || || || || || || || ||| Sbjct 69137 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 69078 Query 118731 ATCTGCAT 118738 |||||||| Sbjct 69077 ATCTGCAT 69070 >seq576 Length=37320 Score = 111 bits (122), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| |||||||| || || |||||||| ||| || ||||| |||||| ||||| Sbjct 12171 TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGC 12112 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||| ||| | |||||||||||||| || ||||| || ||||||||||| || || Sbjct 12111 TTTCCGGCGAAAATGAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTA 12052 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 ||||| | || | || |||| ||| ||||||| ||| | || ||||||||| Sbjct 12051 GACTTAACGTTGTCAATAGTATCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTC 11992 Query 118716 A 118716 | Sbjct 11991 A 11991 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| || || || |||||||| ||| || ||||| ||||| Sbjct 12461 ACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCA 12402 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || | ||||||||||||||||| ||||| || |||||||| || Sbjct 12401 AGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTATCCTGG 12342 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | | |||||| |||| ||| | || ||| Sbjct 12341 ATCTTGGACTTGACATTGTCGATGGTATCAGAGGACTCGACTTCGAGGGTGATGGTCTTG 12282 Query 118710 CCGGTCAGAGTTTTTACAA 118728 ||||| || || || |||| Sbjct 12281 CCGGTAAGGGTCTTGACAA 12263 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||||| || || || |||||||| || | ||||| ||||| Sbjct 12689 ACCAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCA 12630 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| |||||||| ||||||||||||||||||| ||||| || |||||||| || Sbjct 12629 AGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTATCCTGG 12570 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | || |||| ||||||||||| || | || ||| Sbjct 12569 ATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATAGTCTTG 12510 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| || ||||| Sbjct 12509 CCCGTCAGGGTCTTGACAAAGATTTGCAT 12481 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || || || || |||||||| || | ||||| ||||||| Sbjct 12917 ACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCCTCG 12858 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || |||||||| |||||||||||||||| || ||||| || ||||||||||| Sbjct 12857 AGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGG 12798 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | || |||| ||||||||||| || | || ||| Sbjct 12797 ATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATAGTCTTG 12738 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| || ||||| Sbjct 12737 CCCGTCAGGGTCTTGACAAAGATTTGCAT 12709 >seq492 Length=47418 Score = 102 bits (112), Expect = 7e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| || |||||| |||||| ||||| Sbjct 44744 GTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTG 44685 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| | |||||||| || || || |||||||||||||| || || Sbjct 44684 CTTGCCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 44625 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||||||| ||||||||| | ||| | || || || || Sbjct 44624 GGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGT 44565 Query 118715 CAGAGTTTTTACAAAA 118730 ||| || || || ||| Sbjct 44564 CAGGGTCTTGACGAAA 44549 >seq431 Length=155802 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 45074 GAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGGTGGGA 45133 || ||||| | ||||||| ||| || | | |||||||| ||| || | ||| Sbjct 44252 GATGCCGTTGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTTCCCTGCGGTCTGCTAGGA 44311 Query 45134 ATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCG----T 45189 |||||||| || |||||| |||||||||||||||| || || || || || | | Sbjct 44312 ATGAACGCCGATCTGATGAAGCAGTACATTGAGTTTGTTGCGGACCGCCTGCTTGTTGCT 44371 Query 45190 CCAGTTAAAGTATCCCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAATAT 45249 | || || | | ||| ||||| | | ||||| ||||| || ||| | || || Sbjct 44372 CTAGGCAACGAA----AAGGTGTACCGTGCCACAAACCCCTTCGACTTCATGGAGAACAT 44427 Query 45250 TTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATACAAG 45301 ||| | | ||||| ||||| || |||||||| || ||||| || ||| || Sbjct 44428 CTCGCTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCGGTGATTACCAG 44479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433822971332260