Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq576 102 9e-17 seq1207 96.9 4e-15 seq492 86.0 7e-12 >seq576 Length=37320 Score = 102 bits (112), Expect = 9e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||||| | ||| ||||| || || ||||| |||| || || || | Sbjct 12924 ACGCAGAACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACC 12865 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || ||||| ||||| || ||||| ||||||||||| | || | | |||||| Sbjct 12864 ATCCTCGAGTTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTT 12805 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| | | | || || || || || |||| || || Sbjct 12804 GTCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAAT 12745 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| || ||||| |||||||||||||| Sbjct 12744 AGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12709 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||||| | || ||||| || || ||||| |||| || || || | Sbjct 12696 ACGCAGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCC 12637 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| ||||| || ||||| |||||||| || | || | | |||||| Sbjct 12636 GTCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTT 12577 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || |||| | | | || || || || || |||| || || Sbjct 12576 ATCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAAT 12517 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| || ||||| |||||||||||||| Sbjct 12516 AGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12481 >seq1207 Length=77990 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| ||||| ||||| |||| ||| || || | || || |||||||| |||||||| | Sbjct 69259 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 69200 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 43112 | || ||||||||||| | || | || |||||||||| ||| | || | |||| | Sbjct 69199 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTAGACTTGACATTG 69141 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| || || || |||| || || || || ||||| || ||||| || Sbjct 69140 TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACG 69081 Query 43173 AAGATTTGCATTTTTAC 43189 || || ||||| || || Sbjct 69080 AAAATCTGCATCTTGAC 69064 >seq492 Length=47418 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | |||||| || | || || |||||||| ||||| || Sbjct 44732 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAA 44673 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 44672 GATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 44614 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || || | || ||||| || ||||| || ||||| | Sbjct 44613 TGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGA 44554 Query 43171 CAAA 43174 | || Sbjct 44553 CGAA 44550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571807557453400