Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq539 239 4e-58
seq1207 105 6e-18
>seq539
Length=40911
Score = 239 bits (264), Expect = 4e-58
Identities = 631/956 (66%), Gaps = 18/956 (2%)
Strand=Plus/Plus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086
|| || || ||||| || || |||||||| || ||||| | ||| || || ||
Sbjct 17076 GATGCTAGGTTGCACACAGCAACCTCGTCAGGGGCACAATACTCGATAATCTCAGTGCAC 17135
Query 23087 AGATT---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143
|| || ||| | || || || | ||| |||| ||||| || || |||||
Sbjct 17136 AGGTTTGAGCTGCGG---ATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAATGG 17192
Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203
|| ||||| |||||| | || |||| ||||| ||| | ||| | || || ||||
Sbjct 17193 TCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGGGCCTCCAGAATGGCATACCAC 17252
Query 23204 ATAGTCTGAGCGTGAACA--CGT-CGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTAC 23260
| |||| || | ||| ||| || || | ||| |||| |||||||||| |||
Sbjct 17253 AGCTTCTGGGCCTTGACAACCGTGCGACCGCGAC--CCTCCTTC-TCGTACTTTTCATAC 17309
Query 23261 AACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATG 23320
| || ||||| || | || || || || |||| |||||| ||| | || ||||||
Sbjct 17310 AGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCACATG 17369
Query 23321 AGACTCCACATTGAGTCATTTT---CAACGCGTCTCATAAAAAGATCCGGTATCCATAGA 23377
||| |||| ||||||| |||| || |||| || | || ||||| ||
Sbjct 17370 AGAGTCCAGTCC---TCATTTTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGG 17426
Query 23378 GCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAA 23437
|| |||| || || || || || || || || || ||| |||||| ||| || |
Sbjct 17427 GCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGCAAGTCGAGG 17486
Query 23438 AAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTA 23497
|| || || || || |||||||| ||||||||||||| |||||| || || |||| |||
Sbjct 17487 AACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGTCGCTTG 17546
Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557
|| || ||||| || || |||||||| ||||||||| | || | |||||| || |||| |
Sbjct 17547 TTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGATA 17606
Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617
||||| || | ||| || || | || || | || |||| ||| ||
Sbjct 17607 CCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGGACA 17666
Query 23618 TGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAG 23677
| || ||| || || || || || || ||||| || || || || || |||||
Sbjct 17667 TTGAGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAA 17726
Query 23678 ATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG 23737
||||||||||||||||| ||||| | |||| | ||| |||||||||| || || | |
Sbjct 17727 ATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGAGCCTGG 17786
Query 23738 GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGA 23797
|| ||| | || || || || || ||||| || ||| | | ||||| |
Sbjct 17787 GGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGGACATAAAG 17846
Query 23798 TTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATC 23857
||||| || || | | || | | || || ||||| | || || |||||
Sbjct 17847 TTGTAGGTTTCAAGCACACGTTCGACTTTGTCACCCCAAATACCCACAGCAACACGCATT 17906
Query 23858 ATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGC 23917
||||||| || || | || || | || | | ||| | || || ||||| |
Sbjct 17907 ATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTAGGTAAGAACGCTCA 17966
Query 23918 ATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973
| || ||||| ||||| || | ||||| ||||||||||||| ||| ||||| ||
Sbjct 17967 AGAGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATGGCAGA 18022
Score = 116 bits (128), Expect = 3e-21
Identities = 162/224 (72%), Gaps = 5/224 (2%)
Strand=Plus/Plus
Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAAC 22510
|||| ||||| || |||||||| | ||||| ||||||| ||||| |||||||||||| |
Sbjct 16501 GGTTGACCACCTGGAACTCGCCAG-CAAGAACGCGGCGCTGGTAGATGTTGGATGTGTAG 16559
Query 22511 GGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCC 22570
|||||||| | |||||||| ||||| ||||| | || || || ||||| || ||
Sbjct 16560 GGTTCGAAGCACTCATTGTTGCCCAGAATCTGCGATGTGCTGGCTGTAGGCATGGGTGCA 16619
Query 22571 AACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCC 22630
| ||| || || || | | || |||| | ||| || ||| || | |||||||
Sbjct 16620 ACCAGAAGAGAATTGCGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAGTCC 16679
Query 22631 CACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAA 22674
||||| || || |||||| ||||||||||| | |||||
Sbjct 16680 CACAGGTCACTAGGAGTCACA---TCCCACATATCAAACTGCAA 16720
>seq1207
Length=77990
Score = 105 bits (116), Expect = 6e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| || || || || ||||| ||| |||| ||||| |
Sbjct 69067 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 69126
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| |||| | |||| | ||||| | || ||||||||| ||| | || || |||
Sbjct 69127 TCGGACACTATCGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 69186
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||||| || || ||||||||||| ||| |||| ||
Sbjct 69187 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGA 69224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445758571227600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |