Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq539 239 4e-58 seq1207 105 6e-18 >seq539 Length=40911 Score = 239 bits (264), Expect = 4e-58 Identities = 631/956 (66%), Gaps = 18/956 (2%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 || || || ||||| || || |||||||| || ||||| | ||| || || || Sbjct 17076 GATGCTAGGTTGCACACAGCAACCTCGTCAGGGGCACAATACTCGATAATCTCAGTGCAC 17135 Query 23087 AGATT---GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143 || || ||| | || || || | ||| |||| ||||| || || ||||| Sbjct 17136 AGGTTTGAGCTGCGG---ATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAATGG 17192 Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 || ||||| |||||| | || |||| ||||| ||| | ||| | || || |||| Sbjct 17193 TCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGGGCCTCCAGAATGGCATACCAC 17252 Query 23204 ATAGTCTGAGCGTGAACA--CGT-CGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTAC 23260 | |||| || | ||| ||| || || | ||| |||| |||||||||| ||| Sbjct 17253 AGCTTCTGGGCCTTGACAACCGTGCGACCGCGAC--CCTCCTTC-TCGTACTTTTCATAC 17309 Query 23261 AACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATG 23320 | || ||||| || | || || || || |||| |||||| ||| | || |||||| Sbjct 17310 AGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCACATG 17369 Query 23321 AGACTCCACATTGAGTCATTTT---CAACGCGTCTCATAAAAAGATCCGGTATCCATAGA 23377 ||| |||| ||||||| |||| || |||| || | || ||||| || Sbjct 17370 AGAGTCCAGTCC---TCATTTTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGG 17426 Query 23378 GCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAA 23437 || |||| || || || || || || || || || ||| |||||| ||| || | Sbjct 17427 GCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGCAAGTCGAGG 17486 Query 23438 AAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTA 23497 || || || || || |||||||| ||||||||||||| |||||| || || |||| ||| Sbjct 17487 AACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGTCGCTTG 17546 Query 23498 TTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGA 23557 || || ||||| || || |||||||| ||||||||| | || | |||||| || |||| | Sbjct 17547 TTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGATA 17606 Query 23558 CCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACG 23617 ||||| || | ||| || || | || || | || |||| ||| || Sbjct 17607 CCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGGACA 17666 Query 23618 TGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAG 23677 | || ||| || || || || || || ||||| || || || || || ||||| Sbjct 17667 TTGAGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAA 17726 Query 23678 ATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTG 23737 ||||||||||||||||| ||||| | |||| | ||| |||||||||| || || | | Sbjct 17727 ATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGAGCCTGG 17786 Query 23738 GGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGA 23797 || ||| | || || || || || ||||| || ||| | | ||||| | Sbjct 17787 GGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGGACATAAAG 17846 Query 23798 TTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATC 23857 ||||| || || | | || | | || || ||||| | || || ||||| Sbjct 17847 TTGTAGGTTTCAAGCACACGTTCGACTTTGTCACCCCAAATACCCACAGCAACACGCATT 17906 Query 23858 ATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGC 23917 ||||||| || || | || || | || | | ||| | || || ||||| | Sbjct 17907 ATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTAGGTAAGAACGCTCA 17966 Query 23918 ATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 | || ||||| ||||| || | ||||| ||||||||||||| ||| ||||| || Sbjct 17967 AGAGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATGGCAGA 18022 Score = 116 bits (128), Expect = 3e-21 Identities = 162/224 (72%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAAC 22510 |||| ||||| || |||||||| | ||||| ||||||| ||||| |||||||||||| | Sbjct 16501 GGTTGACCACCTGGAACTCGCCAG-CAAGAACGCGGCGCTGGTAGATGTTGGATGTGTAG 16559 Query 22511 GGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCC 22570 |||||||| | |||||||| ||||| ||||| | || || || ||||| || || Sbjct 16560 GGTTCGAAGCACTCATTGTTGCCCAGAATCTGCGATGTGCTGGCTGTAGGCATGGGTGCA 16619 Query 22571 AACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCC 22630 | ||| || || || | | || |||| | ||| || ||| || | ||||||| Sbjct 16620 ACCAGAAGAGAATTGCGTACACCATGCTGTTTAATCTTCTCCTTCAGAGAAGTCCAGTCC 16679 Query 22631 CACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAA 22674 ||||| || || |||||| ||||||||||| | ||||| Sbjct 16680 CACAGGTCACTAGGAGTCACA---TCCCACATATCAAACTGCAA 16720 >seq1207 Length=77990 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||| ||| |||| ||||| | Sbjct 69067 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 69126 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 69127 TCGGACACTATCGACAATGTCAAGTCTAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 69186 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || ||||||||||| ||| |||| || Sbjct 69187 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGA 69224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445758571227600