Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq431 109 1e-18 seq539 84.2 4e-11 >seq431 Length=155802 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||||||||| || || || ||||| || ||||| ||||| ||||| |||||| Sbjct 44045 GTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCGGGTGCCTTCGCCTCCATCTTCTGG 44104 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || | ||| | |||||||||| |||| ||| || ||| |||||||| | ||| Sbjct 44105 CTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTCATTTCTCGTGAC 44164 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 || || || || ||||||||| ||| ||||||| Sbjct 44165 GAGGGCCTGCACACCGACTTTGCTTGCCTGCTGTT 44199 >seq539 Length=40911 Score = 84.2 bits (92), Expect = 4e-11 Identities = 175/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| || ||||| ||||||| || || || ||| || ||||| ||||| ||| Sbjct 17673 CCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCC 17732 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTT 94905 || ||||| ||||||| | | | | ||||||||||| || | || | | || Sbjct 17733 TCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGAGCCTGGGGGGTA 17792 Query 94906 CCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATAT 94965 ||| |||||| || || || || || || || || | | || ||||| | | || Sbjct 17793 CCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGGACATAAAGTTGTAG 17852 Query 94966 GTTTCAATGACAGATTTGA-TGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 ||||||| ||| || || | | | | || ||| || ||||| |||||||| ||||| Sbjct 17853 GTTTCAAGCACACGTTCGACTTTGTCA-CCCCAAATACCCACAGCAACACGCATTATCAT 17911 Query 95025 GTCCTGAGGGCGCTCAAC 95042 || ||| || || ||||| Sbjct 17912 GTGCTGGGGACGTTCAAC 17929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989566185941775