Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq431 109 1e-18
seq539 84.2 4e-11
>seq431
Length=155802
Score = 109 bits (120), Expect = 1e-18
Identities = 117/155 (75%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|||||||||||||| || || || ||||| || ||||| ||||| ||||| ||||||
Sbjct 44045 GTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCGGGTGCCTTCGCCTCCATCTTCTGG 44104
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
| || | ||| | |||||||||| |||| ||| || ||| |||||||| | |||
Sbjct 44105 CTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTCATTTCTCGTGAC 44164
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072
|| || || || ||||||||| ||| |||||||
Sbjct 44165 GAGGGCCTGCACACCGACTTTGCTTGCCTGCTGTT 44199
>seq539
Length=40911
Score = 84.2 bits (92), Expect = 4e-11
Identities = 175/258 (68%), Gaps = 2/258 (1%)
Strand=Plus/Plus
Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845
|||| || ||||| ||||||| || || || ||| || ||||| ||||| |||
Sbjct 17673 CCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCC 17732
Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTT 94905
|| ||||| ||||||| | | | | ||||||||||| || | || | | ||
Sbjct 17733 TCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGAGCCTGGGGGGTA 17792
Query 94906 CCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATAT 94965
||| |||||| || || || || || || || || | | || ||||| | | ||
Sbjct 17793 CCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGGACATAAAGTTGTAG 17852
Query 94966 GTTTCAATGACAGATTTGA-TGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024
||||||| ||| || || | | | | || ||| || ||||| |||||||| |||||
Sbjct 17853 GTTTCAAGCACACGTTCGACTTTGTCA-CCCCAAATACCCACAGCAACACGCATTATCAT 17911
Query 95025 GTCCTGAGGGCGCTCAAC 95042
|| ||| || || |||||
Sbjct 17912 GTGCTGGGGACGTTCAAC 17929
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989566185941775
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |