Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq539 152 6e-32 seq431 152 6e-32 >seq539 Length=40911 Score = 152 bits (168), Expect = 6e-32 Identities = 504/773 (65%), Gaps = 22/773 (3%) Strand=Plus/Plus Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 ||||||||| | | | ||||| |||||| || || | ||| ||||| | ||||||| Sbjct 17481 TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGT 17540 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || |||||||| ||||| || | || | || ||||| || |||| | | ||| ||| Sbjct 17541 CGCTTGTTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGA 17600 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA--T 63531 | |||||||| || |||| || ||||| | || || ||| ||||||||||| Sbjct 17601 ACGATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGG 17660 Query 63532 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63591 | |||| ||||| || || || ||||| || || || | || || || | | Sbjct 17661 TGGACATTG--AGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGG 17718 Query 63592 TGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63651 | || || ||||| || ||||| ||||| |||||| | ||| || || ||||| | Sbjct 17719 TATCGTAAATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACT 17778 Query 63652 GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63711 | | | || || |||||||| | ||||| || ||||| || || | || | Sbjct 17779 GAGCCTGGGGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGG 17838 Query 63712 AAAGTAGATTGTACGTCTCA---ATAGCTGAGTCTAT---ATCCCATTGATGAATTCCTA 63765 | | | ||||| || ||| | | | | || | | |||| ||| || | Sbjct 17839 ACATAAAGTTGTAGGTTTCAAGCACACGTTCGACTTTGTCACCCCA------AATACCCA 17892 Query 63766 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACA 63825 | || |||||||||| ||||||||| || | ||||||||| || | | ||||| | Sbjct 17893 CAGCAACACGCATTATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTA 17952 Query 63826 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 63885 ||| || || | ||| ||||| ||||| || | ||| ||||| || ||||| | Sbjct 17953 GGTAAGAACGCTCAAGAGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACA 18012 Query 63886 TAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCAT-GGTAATACTTGAA 63944 || | || | |||| |||||| | ||| | | ||| || | || Sbjct 18013 CGATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCATATGTCTCTTTGGAG 18071 Query 63945 ATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACT 64004 || || ||||| ||| | || || |||||||| | | | | || | || ||| Sbjct 18072 ATCATAGGAGAGGCTTTACGGTTCGCGGGGTTAACATAATGGTAAAGGTCATACACCAC- 18130 Query 64005 TCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAG 64063 || | || | || || |||| |||||| ||||| || | || || | |||||| || Sbjct 18131 CGACGACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCGGCCAG 18190 Query 64064 AATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64115 ||||||||||| ||||| |||| | || || ||| || ||||||| ||| Sbjct 18191 GATGGCATAATCGGGATG-TGTGACGGTCATGTAGGCGGCAGTTTCGGCGGCC 18242 Score = 89.7 bits (98), Expect = 6e-13 Identities = 203/305 (67%), Gaps = 3/305 (1%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 |||||||| || || || | || | | |||||| || |||||||| ||||| || ||| Sbjct 16164 GTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGA 16223 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || || |||| ||| ||| ||||| || || | ||| | |||||| || Sbjct 16224 CCTAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGATCTTTCATG 16283 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || || || | ||| || ||| || ||||| || || | ||| |||||||||| | Sbjct 16284 TGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCAGCCATTTGCACA 16343 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 | || || | ||||||||||| || || || | |||||||| | |||| | Sbjct 16344 ACTGTACGCTGGGAAATTTCCCAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATG 16403 Query 62286 TTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 | | | |||||||| |||||| || | ||||| | ||||| || | ||| | Sbjct 16404 CTAGGGATGTTCTGAATAGATCCATTGTCCGCAATAATGCGGTTCTTCATATTGTCAGAC 16463 Query 62343 CATAA 62347 ||||| Sbjct 16464 CATAA 16468 >seq431 Length=155802 Score = 152 bits (168), Expect = 6e-32 Identities = 380/571 (67%), Gaps = 16/571 (3%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || || || || ||| |||||| |||||||| | | ||| | ||||| || Sbjct 44199 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAAATGAGCTCGTTTGAG 44140 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || || ||||| || |||||||| ||||| || ||||| ||||| | || Sbjct 44139 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCC 44080 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 33750 || || ||||| || || || ||||||||||||| || | || || ||| | | | Sbjct 44079 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCA-AACGTAGACTC 44021 Query 33751 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 |||| |||||||| ||||||| |||||||| | || || || || || Sbjct 44020 CTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGACGGATGCAGGGAATAGTGTC 43961 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCA 33864 |||||||| | |||| | | | | | | | || || | || || || || | Sbjct 43960 AATGGCATTGA----ATAGGTATGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATTA 43905 Query 33865 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33924 || ||| |||| ||||| |||||||| || ||||| || |||||||| || | Sbjct 43904 GCAGCGAATAGGTTTCAGAATGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCACC 43845 Query 33925 TAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 33984 ||||||| ||||||||| || | || || || | | ||||| || || || | Sbjct 43844 GGGCCTCGGGAATCTGCACCTCGCCTGAGAAGCGCTCAACGAGGTTTTCGTTGACGATGC 43785 Query 33985 CATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGT 34042 ||||| ||| ||||| || || | | || || || || | ||||| || | Sbjct 43784 CATCAGAGGCAGCAAAGAAGGCGAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCA 43725 Query 34043 TA-GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 34101 | | || ||||| || | || ||| || || | ||| | ||||| | ||||| || | Sbjct 43724 GACGGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCTTCAGCAGTCCAGAAGG 43665 Query 34102 ATGCCTCTGCCTTTTTATACATATTCCAGAT 34132 | ||||| ||||| || ||||| | |||||| Sbjct 43664 AAGCCTCGGCCTTCTTGTACATCTGCCAGAT 43634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629806538828400