Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq539 93.3 6e-14 >seq539 Length=40911 Score = 93.3 bits (102), Expect = 6e-14 Identities = 204/305 (67%), Gaps = 3/305 (1%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||| || || || | || | | |||||| || |||||||| ||||| || ||| Sbjct 16164 GTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGA 16223 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || || |||| ||| ||| ||||| || || | ||| | |||||| || Sbjct 16224 CCTAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGATCTTTCATG 16283 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || || || | ||| || ||| || ||||| || || | ||| |||||||||| | Sbjct 16284 TGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCAGCCATTTGCACA 16343 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 | || || | ||||||||||| || || || | |||||||| | |||| | Sbjct 16344 ACTGTACGCTGGGAAATTTCCCAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATG 16403 Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 | | | |||||||| |||||| || || ||||| | ||||| || | ||| | Sbjct 16404 CTAGGGATGTTCTGAATAGATCCATTGTCCGCAATAATGCGGTTCTTCATATTGTCAGAC 16463 Query 65136 CATAA 65140 ||||| Sbjct 16464 CATAA 16468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658161240840200