Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq539 174 2e-38
seq431 143 4e-29
>seq539
Length=40911
Score = 174 bits (192), Expect = 2e-38
Identities = 508/769 (66%), Gaps = 14/769 (2%)
Strand=Plus/Plus
Query 80026 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGT 80085
||||||||| | | | ||||| |||||| || || | ||| ||||| | |||| |||
Sbjct 17481 TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGT 17540
Query 80086 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 80145
|| |||||||| ||||| || | || | || ||||| || |||| | | ||| |||
Sbjct 17541 CGCTTGTTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGA 17600
Query 80146 ATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--T 80203
| ||||| || || ||||| || || || | || || ||| |||||||||||
Sbjct 17601 ACGATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGG 17660
Query 80204 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 80263
| |||| ||||| || || || ||||| || || || | || || || | |
Sbjct 17661 TGGACATTG--AGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGG 17718
Query 80264 TATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTT 80323
|||| || |||||||| ||||| ||||| |||||| | ||| || || ||||| |
Sbjct 17719 TATCGTAAATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACT 17778
Query 80324 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 80383
| | || || |||||||| | ||||| || ||||| || || | || |
Sbjct 17779 GAGCCTGGGGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGG 17838
Query 80384 ACAGTAGATTGTACGTCTCAATAGCTGATTCTA-TATCCCATTGATGAATTCCTACCGCG 80442
||| | ||||| || |||| | ||| | | | || ||| || || ||
Sbjct 17839 ACATAAAGTTGTAGGTTTCAAGCACACGTTCGACTTTGTCA-CCCCAAATACCCACAGCA 17897
Query 80443 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAA 80502
|||||||||| ||||||||| || | |||||| ||||| || | ||||| | ||||
Sbjct 17898 ACACGCATTATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTAGGTAA 17957
Query 80503 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 80562
|| || | ||| ||||| ||||| || | ||| ||||| || ||||| | ||
Sbjct 17958 GAACGCTCAAGAGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATG 18017
Query 80563 ACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTT--GAAATAA 80620
| |||| || | |||||| | ||| | || ||| || ||| || || |
Sbjct 18018 GCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCAT-ATGTCTCTTTGGAGATCA 18075
Query 80621 TCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCAC 80680
| ||||| ||| | || || |||||||| | | | | || | || ||| ||
Sbjct 18076 TAGGAGAGGCTTTACGGTTCGCGGGGTTAACATAATGGTAAAGGTCATACACCAC-CGAC 18134
Query 80681 TA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATG 80739
| || | || || |||| |||||| ||||| || || || || | |||||| | |||
Sbjct 18135 GACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCGGCCAGGATG 18194
Query 80740 GCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 80787
|||||||| ||||| |||| | || || ||| || ||||||| |||
Sbjct 18195 GCATAATCGGGATG-TGTGACGGTCATGTAGGCGGCAGTTTCGGCGGCC 18242
Score = 89.7 bits (98), Expect = 7e-13
Identities = 203/305 (67%), Gaps = 3/305 (1%)
Strand=Plus/Plus
Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777
|||||||| || || || | || | | |||||| || |||||||| ||||| || |||
Sbjct 16164 GTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGA 16223
Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837
|| || |||| ||| || ||||| || || | ||| | |||||| ||
Sbjct 16224 CCTAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGATCTTTCATG 16283
Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897
|| || || | ||| || ||| || ||||| || || | ||| |||||||||| |
Sbjct 16284 TGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCAGCCATTTGCACA 16343
Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957
| || || | ||||||||||| || || || | |||||||| | |||| |
Sbjct 16344 ACTGTACGCTGGGAAATTTCCCAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATG 16403
Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014
| | | |||||||| |||||| || || ||||| | ||||| || | ||| |
Sbjct 16404 CTAGGGATGTTCTGAATAGATCCATTGTCCGCAATAATGCGGTTCTTCATATTGTCAGAC 16463
Query 79015 CATAA 79019
|||||
Sbjct 16464 CATAA 16468
>seq431
Length=155802
Score = 143 bits (158), Expect = 4e-29
Identities = 376/570 (66%), Gaps = 14/570 (2%)
Strand=Plus/Minus
Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010
|||| || || || || ||| |||||| |||||||| | | ||| || ||||| ||
Sbjct 44199 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAAATGAGCTCGTTTGAG 44140
Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070
|| || || || ||||| || |||||||| ||||| || ||||| || || | ||
Sbjct 44139 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCC 44080
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CG 50127
|| || ||||| || || || || ||||||||||| || | || || | | | |
Sbjct 44079 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTAGACTCC 44020
Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187
|||| |||||||| ||||||| |||||||| | || || || || ||
Sbjct 44019 TTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGACGGATGCAGGGAATAGTGTCA 43960
Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCAA 50243
|||||||| | |||| | | | | | | | || || | || || || || |
Sbjct 43959 ATGGCATTGA----ATAGGTATGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATTAG 43904
Query 50244 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 50303
|| ||| |||| ||||| |||||||| || ||||| || |||||||| || |
Sbjct 43903 CAGCGAATAGGTTTCAGAATGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCACCG 43844
Query 50304 AGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCC 50363
||||||| ||||||||| || | || || ||| | | ||||| || || || ||
Sbjct 43843 GGCCTCGGGAATCTGCACCTCGCCTGAGAAGCGCTCAACGAGGTTTTCGTTGACGATGCC 43784
Query 50364 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGT--TGGGTGTT 50421
||| ||| ||||| || || | | || || || | | |||| | | |
Sbjct 43783 ATCAGAGGCAGCAAAGAAGGCGAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAG 43724
Query 50422 A-GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA 50480
| | || ||||| || | || ||| || || | ||| | ||||| | ||||| || ||
Sbjct 43723 ACGGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCTTCAGCAGTCCAGAAGGA 43664
Query 50481 TGCCTCTGCCTTTTTATACATATTCCAGAT 50510
||||| ||||| || ||||| | ||||||
Sbjct 43663 AGCCTCGGCCTTCTTGTACATCTGCCAGAT 43634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718256185404200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |