Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq539 174 2e-38 seq431 143 4e-29 >seq539 Length=40911 Score = 174 bits (192), Expect = 2e-38 Identities = 508/769 (66%), Gaps = 14/769 (2%) Strand=Plus/Plus Query 80026 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGT 80085 ||||||||| | | | ||||| |||||| || || | ||| ||||| | |||| ||| Sbjct 17481 TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGT 17540 Query 80086 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 80145 || |||||||| ||||| || | || | || ||||| || |||| | | ||| ||| Sbjct 17541 CGCTTGTTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGA 17600 Query 80146 ATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--T 80203 | ||||| || || ||||| || || || | || || ||| ||||||||||| Sbjct 17601 ACGATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGG 17660 Query 80204 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 80263 | |||| ||||| || || || ||||| || || || | || || || | | Sbjct 17661 TGGACATTG--AGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGG 17718 Query 80264 TATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTT 80323 |||| || |||||||| ||||| ||||| |||||| | ||| || || ||||| | Sbjct 17719 TATCGTAAATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACT 17778 Query 80324 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 80383 | | || || |||||||| | ||||| || ||||| || || | || | Sbjct 17779 GAGCCTGGGGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGG 17838 Query 80384 ACAGTAGATTGTACGTCTCAATAGCTGATTCTA-TATCCCATTGATGAATTCCTACCGCG 80442 ||| | ||||| || |||| | ||| | | | || ||| || || || Sbjct 17839 ACATAAAGTTGTAGGTTTCAAGCACACGTTCGACTTTGTCA-CCCCAAATACCCACAGCA 17897 Query 80443 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAA 80502 |||||||||| ||||||||| || | |||||| ||||| || | ||||| | |||| Sbjct 17898 ACACGCATTATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTAGGTAA 17957 Query 80503 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 80562 || || | ||| ||||| ||||| || | ||| ||||| || ||||| | || Sbjct 17958 GAACGCTCAAGAGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATG 18017 Query 80563 ACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTT--GAAATAA 80620 | |||| || | |||||| | ||| | || ||| || ||| || || | Sbjct 18018 GCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCAT-ATGTCTCTTTGGAGATCA 18075 Query 80621 TCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCAC 80680 | ||||| ||| | || || |||||||| | | | | || | || ||| || Sbjct 18076 TAGGAGAGGCTTTACGGTTCGCGGGGTTAACATAATGGTAAAGGTCATACACCAC-CGAC 18134 Query 80681 TA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATG 80739 | || | || || |||| |||||| ||||| || || || || | |||||| | ||| Sbjct 18135 GACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCGGCCAGGATG 18194 Query 80740 GCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 80787 |||||||| ||||| |||| | || || ||| || ||||||| ||| Sbjct 18195 GCATAATCGGGATG-TGTGACGGTCATGTAGGCGGCAGTTTCGGCGGCC 18242 Score = 89.7 bits (98), Expect = 7e-13 Identities = 203/305 (67%), Gaps = 3/305 (1%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||| || || || | || | | |||||| || |||||||| ||||| || ||| Sbjct 16164 GTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGA 16223 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || || |||| ||| || ||||| || || | ||| | |||||| || Sbjct 16224 CCTAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGATCTTTCATG 16283 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || || || | ||| || ||| || ||||| || || | ||| |||||||||| | Sbjct 16284 TGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCAGCCATTTGCACA 16343 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 | || || | ||||||||||| || || || | |||||||| | |||| | Sbjct 16344 ACTGTACGCTGGGAAATTTCCCAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATG 16403 Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 | | | |||||||| |||||| || || ||||| | ||||| || | ||| | Sbjct 16404 CTAGGGATGTTCTGAATAGATCCATTGTCCGCAATAATGCGGTTCTTCATATTGTCAGAC 16463 Query 79015 CATAA 79019 ||||| Sbjct 16464 CATAA 16468 >seq431 Length=155802 Score = 143 bits (158), Expect = 4e-29 Identities = 376/570 (66%), Gaps = 14/570 (2%) Strand=Plus/Minus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || || || || ||| |||||| |||||||| | | ||| || ||||| || Sbjct 44199 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAAATGAGCTCGTTTGAG 44140 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || || || ||||| || |||||||| ||||| || ||||| || || | || Sbjct 44139 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCC 44080 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CG 50127 || || ||||| || || || || ||||||||||| || | || || | | | | Sbjct 44079 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTAGACTCC 44020 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 |||| |||||||| ||||||| |||||||| | || || || || || Sbjct 44019 TTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGACGGATGCAGGGAATAGTGTCA 43960 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCAA 50243 |||||||| | |||| | | | | | | | || || | || || || || | Sbjct 43959 ATGGCATTGA----ATAGGTATGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATTAG 43904 Query 50244 AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCT 50303 || ||| |||| ||||| |||||||| || ||||| || |||||||| || | Sbjct 43903 CAGCGAATAGGTTTCAGAATGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCACCG 43844 Query 50304 AGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCC 50363 ||||||| ||||||||| || | || || ||| | | ||||| || || || || Sbjct 43843 GGCCTCGGGAATCTGCACCTCGCCTGAGAAGCGCTCAACGAGGTTTTCGTTGACGATGCC 43784 Query 50364 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGT--TGGGTGTT 50421 ||| ||| ||||| || || | | || || || | | |||| | | | Sbjct 43783 ATCAGAGGCAGCAAAGAAGGCGAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCAG 43724 Query 50422 A-GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA 50480 | | || ||||| || | || ||| || || | ||| | ||||| | ||||| || || Sbjct 43723 ACGGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCTTCAGCAGTCCAGAAGGA 43664 Query 50481 TGCCTCTGCCTTTTTATACATATTCCAGAT 50510 ||||| ||||| || ||||| | |||||| Sbjct 43663 AGCCTCGGCCTTCTTGTACATCTGCCAGAT 43634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718256185404200