Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq539 145 1e-29 >seq539 Length=40911 Score = 145 bits (160), Expect = 1e-29 Identities = 480/737 (65%), Gaps = 16/737 (2%) Strand=Plus/Plus Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168 ||||||||| | | | ||||| |||||| || || | ||| ||||| | |||| || Sbjct 17481 TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGT 17540 Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228 || |||||||| ||||| || | || | || ||||| || |||| | | ||| ||| Sbjct 17541 CGCTTGTTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGA 17600 Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--T 72286 | ||||| || || | ||| || || || | || || ||| ||||||||||| Sbjct 17601 ACGATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGG 17660 Query 72287 TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 72346 || |||| ||||| || || || ||||| || || || | || || || | | Sbjct 17661 TGGACATTG--AGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGG 17718 Query 72347 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 72406 |||| || |||||||| || || ||||| |||||| | ||| || || ||||| | Sbjct 17719 TATCGTAAATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACT 17778 Query 72407 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 72466 | | || || |||||||| | ||||| || ||||| || || | || | Sbjct 17779 GAGCCTGGGGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGG 17838 Query 72467 ACAGTAGATTGTACGTCTCAATAGCTGATT---CTATATCCCATTGATGTATTCCTACCG 72523 ||| | ||||| || |||| | || || | || | | || || || | Sbjct 17839 ACATAAAGTTGTAGGTTTCAAGCACACGTTCGACTTTGTCACCCCAA---ATACCCACAG 17895 Query 72524 CGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 72583 | |||||||||| ||| ||||| || | |||||| ||||| || | ||||| | || Sbjct 17896 CAACACGCATTATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTAGGT 17955 Query 72584 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 72643 | || || | ||| ||||| ||||| || | ||| ||||| || ||||| | | Sbjct 17956 AAGAACGCTCAAGAGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGA 18015 Query 72644 TAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT--GAAAT 72701 | | || | || | |||||| | ||| | | ||| || ||| || || Sbjct 18016 TGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCAT-ATGTCTCTTTGGAGAT 18073 Query 72702 AATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTC 72761 || ||||| ||| | || || |||||||| | | | | || | || ||| Sbjct 18074 CATAGGAGAGGCTTTACGGTTCGCGGGGTTAACATAATGGTAAAGGTCATACACCAC-CG 18132 Query 72762 ACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 || | || | || || |||| |||||| ||||| || || || || | |||||| || | Sbjct 18133 ACGACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCGGCCAGGA 18192 Query 72821 TGGCATAATCTGGATGT 72837 |||||||||| |||||| Sbjct 18193 TGGCATAATCGGGATGT 18209 Score = 96.9 bits (106), Expect = 5e-15 Identities = 192/284 (68%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 70822 GCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAA 70881 || || | |||||| || ||||||||||| || || ||||| || |||| ||| ||| Sbjct 16185 GCAGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCTAGTTTCCAGCCGGCAAAG 16244 Query 70882 TGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTT 70941 ||||| || || | ||| | | ||||| |||||||| || | ||||| | Sbjct 16245 TGCATGCTGGTGATCTTGCCCATGGTGGGATCTTTCATGTGAATGTTTAGAGACTGCGAT 16304 Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 || || ||||| || || | ||| |||||||||| | | || || | ||||||| Sbjct 16305 TGGTCAATGAAAGCACCACGGTCAGCAGCCATTTGCACAACTGTACGCTGGGAAATTTCC 16364 Query 71002 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGAT 71058 |||| || || || | |||||||| | |||| | | | | |||||||| ||| Sbjct 16365 CAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATGCTAGGGATGTTCTGAATAGAT 16424 Query 71059 CCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAA 71102 ||| || |||||||| | || || || | ||| |||||| Sbjct 16425 CCATTGTCCGCAATAATGCGGTTCTTCATATTGTCAGACCATAA 16468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671127413117800