Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq539 145 1e-29
>seq539
Length=40911
Score = 145 bits (160), Expect = 1e-29
Identities = 480/737 (65%), Gaps = 16/737 (2%)
Strand=Plus/Plus
Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168
||||||||| | | | ||||| |||||| || || | ||| ||||| | |||| ||
Sbjct 17481 TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGT 17540
Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228
|| |||||||| ||||| || | || | || ||||| || |||| | | ||| |||
Sbjct 17541 CGCTTGTTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGA 17600
Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--T 72286
| ||||| || || | ||| || || || | || || ||| |||||||||||
Sbjct 17601 ACGATACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGG 17660
Query 72287 TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 72346
|| |||| ||||| || || || ||||| || || || | || || || | |
Sbjct 17661 TGGACATTG--AGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGG 17718
Query 72347 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 72406
|||| || |||||||| || || ||||| |||||| | ||| || || ||||| |
Sbjct 17719 TATCGTAAATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACT 17778
Query 72407 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 72466
| | || || |||||||| | ||||| || ||||| || || | || |
Sbjct 17779 GAGCCTGGGGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGG 17838
Query 72467 ACAGTAGATTGTACGTCTCAATAGCTGATT---CTATATCCCATTGATGTATTCCTACCG 72523
||| | ||||| || |||| | || || | || | | || || || |
Sbjct 17839 ACATAAAGTTGTAGGTTTCAAGCACACGTTCGACTTTGTCACCCCAA---ATACCCACAG 17895
Query 72524 CGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 72583
| |||||||||| ||| ||||| || | |||||| ||||| || | ||||| | ||
Sbjct 17896 CAACACGCATTATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTAGGT 17955
Query 72584 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 72643
| || || | ||| ||||| ||||| || | ||| ||||| || ||||| | |
Sbjct 17956 AAGAACGCTCAAGAGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGA 18015
Query 72644 TAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT--GAAAT 72701
| | || | || | |||||| | ||| | | ||| || ||| || ||
Sbjct 18016 TGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCAT-ATGTCTCTTTGGAGAT 18073
Query 72702 AATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTC 72761
|| ||||| ||| | || || |||||||| | | | | || | || |||
Sbjct 18074 CATAGGAGAGGCTTTACGGTTCGCGGGGTTAACATAATGGTAAAGGTCATACACCAC-CG 18132
Query 72762 ACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820
|| | || | || || |||| |||||| ||||| || || || || | |||||| || |
Sbjct 18133 ACGACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCGGCCAGGA 18192
Query 72821 TGGCATAATCTGGATGT 72837
|||||||||| ||||||
Sbjct 18193 TGGCATAATCGGGATGT 18209
Score = 96.9 bits (106), Expect = 5e-15
Identities = 192/284 (68%), Gaps = 3/284 (1%)
Strand=Plus/Plus
Query 70822 GCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAA 70881
|| || | |||||| || ||||||||||| || || ||||| || |||| ||| |||
Sbjct 16185 GCAGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGACCTAGTTTCCAGCCGGCAAAG 16244
Query 70882 TGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTT 70941
||||| || || | ||| | | ||||| |||||||| || | ||||| |
Sbjct 16245 TGCATGCTGGTGATCTTGCCCATGGTGGGATCTTTCATGTGAATGTTTAGAGACTGCGAT 16304
Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001
|| || ||||| || || | ||| |||||||||| | | || || | |||||||
Sbjct 16305 TGGTCAATGAAAGCACCACGGTCAGCAGCCATTTGCACAACTGTACGCTGGGAAATTTCC 16364
Query 71002 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGAT 71058
|||| || || || | |||||||| | |||| | | | | |||||||| |||
Sbjct 16365 CAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATGCTAGGGATGTTCTGAATAGAT 16424
Query 71059 CCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAA 71102
||| || |||||||| | || || || | ||| ||||||
Sbjct 16425 CCATTGTCCGCAATAATGCGGTTCTTCATATTGTCAGACCATAA 16468
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671127413117800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |