Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq431 241 2e-58 seq156 111 2e-19 seq539 93.3 6e-14 >seq431 Length=155802 Score = 241 bits (266), Expect = 2e-58 Identities = 568/848 (67%), Gaps = 31/848 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| ||||| ||||| | |||||| | ||||| Sbjct 43634 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAAGAGATTGATCTC 43693 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | ||| ||| | |||| | || || || Sbjct 43694 TCCAAGGATCTCCACGACTGGAACAACCGTCTGAACAAGGACGAGCAGTACTTCATCTCC 43753 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 |||||| | ||||||||||| | ||| ||||| ||||||||||| || || ||||| || Sbjct 43754 CACATTCTCGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAACCTCGTTGA-GCG 43812 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 ||||| ||| || ||||| |||| |||||| ||||| ||||| |||||||| Sbjct 43813 CTTCTCAGGCGAGGTGCAGATTCCCGAGGCCCGGTGCTTCTACGGTTTCCAGATCATGAT 43872 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC---C 125314 || ||| | || || |||| || || || ||||||| ||||| || | | Sbjct 43873 GGAAAACATCCATTCTGAAACCTATTCGCTGCTAATTGACACCTACATCAAGGAGCCCTC 43932 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 ||| || | | || || || || || || ||||| | || | || ||| ||||| Sbjct 43933 GCAGCGCACATAC---CTATTCAATGCCATTGACACTATTCCCTGCATCCGTCGCAAGGC 43989 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | ||||||| ||| | ||||| ||| ||| | | || || || Sbjct 43990 CGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCTACGTTTGCCCAGCGCCTAGTTGC 44049 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494 || || || || ||||||||||| || |||||| || || ||||||| ||||| Sbjct 44050 CTTTGCTGCTGTCGAGGGCATCTTTTTCTCGGGTGCCTTCGCCTCCATCTTCTGGCTGCG 44109 Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554 ||||| || |||||||| || ||||| | |||||| | || ||||| |||||||| Sbjct 44110 CAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTCATTTCTCGTGACGAGGG 44169 Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCGAGTGCAGA 125612 ||| ||| |||||||| || ||||| ||||| || | | | ||| || || Sbjct 44170 CCTGCACACCGACTTTGCTTGCCTGCTGTTCTCGCACCTAAACAACCGCCCCAGCAAGGA 44229 Query 125613 TCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTT 125672 | || | ||||| ||||| || |||||||| ||| || | ||||| Sbjct 44230 CCTAGTG--CAAAAGATCATC---------ACTGATGCCGTTGTGATCGAGAAGGAGTTC 44278 Query 125673 CTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732 || ||||| | || || | | || | || |||||| | | || ||| ||||| Sbjct 44279 CTGACCGAGGCTCTTCCCTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAGCAGTAC 44338 Query 125733 ATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC--CG-CAAGATTTACA 125787 || |||||||| || || || || || |||| | ||| || ||| | ||| Sbjct 44339 ATTGAGTTTGTTGCGGACCGCCTGCT-----TGTTGCTCTAGGCAACGAAAAGGTGTACC 44393 Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847 |||| || ||||| || |||||| | ||| || || | || ||||| ||||| | Sbjct 44394 GTGCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCT 44453 Query 125848 TCGAGAAG 125855 | |||||| Sbjct 44454 TTGAGAAG 44461 >seq156 Length=66892 Score = 111 bits (122), Expect = 2e-19 Identities = 168/233 (72%), Gaps = 7/233 (3%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 |||||||| ||||| || || || || |||||| | || | || || |||| || || Sbjct 25671 GGCGATCTTGGGCCTGTATATGGCTTTCAGTGGCGCCATTTCGGGGCCGAGTACGTGGAT 25612 Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCA-ATTGCAGACAATCATTGACACTCT 70185 | ||||||||||| |||| || ||||||||||| | || || |||| ||| || Sbjct 25611 GCCAAGACAGACTATACGGGCCAAGGTGTTGATCAGCTGGCTGA-GGTCATCCACAAACT 25553 Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245 ||||||||| || ||| || | ||| | ||| | | ||||| || || |||||| | Sbjct 25552 CAAGACCAACCCGTACGATCGGCGTATCATTATGACCGCTTGGAACCCCGCGGATTTGAA 25493 Query 70246 CCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTA---CTCGTAC 70294 | ||||| || |||||||| ||| ||||| || || ||||| ||||||| Sbjct 25492 GAAGATGGCGCTGCCACCGTGCCACATGTTT-GCGCAATTTTATGTCTCGTAC 25441 >seq539 Length=40911 Score = 93.3 bits (102), Expect = 6e-14 Identities = 293/447 (66%), Gaps = 8/447 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| || || || || || || || | ||| | ||| | || || ||||| || || Sbjct 17557 CAGGGTGGAAACAAGCGACCTGGAGCCTTTGCCATTTACCTCGAGCCATGGCATGCTGAT 17498 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || |||| ||||||| ||| || ||||| | || || | ||| Sbjct 17497 GTCTTCGAGTTCCTCGACTTGCGCAAGAACCACGGAAAGGAAGAAGTCCGTGCTCGTGAC 17438 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || | || || ||| | || |||||||||||||| || | | || || Sbjct 17437 CTATTCTTGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGTGTTGAGAAAAATGAGGAC 17378 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| | | ||||| || | ||||||| |||||||||||| Sbjct 17377 TGGACTCTCATGTGCCCCAATGAATGCCCCGGCTTGGCGGATTGCTATGGCGAAGAGTTT 17318 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG--AGTCGATGCAC 97173 ||||| ||| |||||| | ||||| || || ||| ||| | || | Sbjct 17317 GAGGCTCTGTATGAAAAGTACGAGAAGGAGGGTCG--CGGTCGCACGGTTGTCAAGGC-C 17261 Query 97174 GAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTC 97232 |||| |||||| | ||||| || ||| ||| |||||||| | || | ||| || Sbjct 17260 CAGAAGCTGTGGTATGCCATTCTGGAGGCCCAGACTGAGACTGGCAACCCTTTCATGCTT 17201 Query 97233 TACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 ||||| || | || || ||||| ||||| || | | || |||||| |||| Sbjct 17200 TACAAAGA-CCATTGCAACCGCAAGAGCAATCAGAAAAATCTAGGTACCATCCGCAGCTC 17142 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTA 97318 || |||||||| || ||| | ||||| Sbjct 17141 AAACCTGTGCACTGAGATTATCGAGTA 17115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741046185147800