Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq431 241 2e-58
seq156 111 2e-19
seq539 93.3 6e-14
>seq431
Length=155802
Score = 241 bits (266), Expect = 2e-58
Identities = 568/848 (67%), Gaps = 31/848 (4%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| ||||| |||| ||||| ||||| | |||||| | |||||
Sbjct 43634 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAAGAGATTGATCTC 43693
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|||||||| || |||| ||| | | ||| ||| | |||| | || || ||
Sbjct 43694 TCCAAGGATCTCCACGACTGGAACAACCGTCTGAACAAGGACGAGCAGTACTTCATCTCC 43753
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
|||||| | ||||||||||| | ||| ||||| ||||||||||| || || ||||| ||
Sbjct 43754 CACATTCTCGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAACCTCGTTGA-GCG 43812
Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257
||||| ||| || ||||| |||| |||||| ||||| ||||| ||||||||
Sbjct 43813 CTTCTCAGGCGAGGTGCAGATTCCCGAGGCCCGGTGCTTCTACGGTTTCCAGATCATGAT 43872
Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC---C 125314
|| ||| | || || |||| || || || ||||||| ||||| || | |
Sbjct 43873 GGAAAACATCCATTCTGAAACCTATTCGCTGCTAATTGACACCTACATCAAGGAGCCCTC 43932
Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374
||| || | | || || || || || || ||||| | || | || ||| |||||
Sbjct 43933 GCAGCGCACATAC---CTATTCAATGCCATTGACACTATTCCCTGCATCCGTCGCAAGGC 43989
Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434
| |||| | ||||||| ||| | ||||| ||| ||| | | || || ||
Sbjct 43990 CGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCTACGTTTGCCCAGCGCCTAGTTGC 44049
Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAA 125494
|| || || || ||||||||||| || |||||| || || ||||||| |||||
Sbjct 44050 CTTTGCTGCTGTCGAGGGCATCTTTTTCTCGGGTGCCTTCGCCTCCATCTTCTGGCTGCG 44109
Query 125495 GAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG 125554
||||| || |||||||| || ||||| | |||||| | || ||||| ||||||||
Sbjct 44110 CAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTCATTTCTCGTGACGAGGG 44169
Query 125555 CCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCGAGTGCAGA 125612
||| ||| |||||||| || ||||| ||||| || | | | ||| || ||
Sbjct 44170 CCTGCACACCGACTTTGCTTGCCTGCTGTTCTCGCACCTAAACAACCGCCCCAGCAAGGA 44229
Query 125613 TCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTT 125672
| || | ||||| ||||| || |||||||| ||| || | |||||
Sbjct 44230 CCTAGTG--CAAAAGATCATC---------ACTGATGCCGTTGTGATCGAGAAGGAGTTC 44278
Query 125673 CTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTAC 125732
|| ||||| | || || | | || | || |||||| | | || ||| |||||
Sbjct 44279 CTGACCGAGGCTCTTCCCTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAGCAGTAC 44338
Query 125733 ATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGGC--CG-CAAGATTTACA 125787
|| |||||||| || || || || || |||| | ||| || ||| | |||
Sbjct 44339 ATTGAGTTTGTTGCGGACCGCCTGCT-----TGTTGCTCTAGGCAACGAAAAGGTGTACC 44393
Query 125788 ACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTT 125847
|||| || ||||| || |||||| | ||| || || | || ||||| ||||| |
Sbjct 44394 GTGCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCT 44453
Query 125848 TCGAGAAG 125855
| ||||||
Sbjct 44454 TTGAGAAG 44461
>seq156
Length=66892
Score = 111 bits (122), Expect = 2e-19
Identities = 168/233 (72%), Gaps = 7/233 (3%)
Strand=Plus/Minus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
|||||||| ||||| || || || || |||||| | || | || || |||| || ||
Sbjct 25671 GGCGATCTTGGGCCTGTATATGGCTTTCAGTGGCGCCATTTCGGGGCCGAGTACGTGGAT 25612
Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCA-ATTGCAGACAATCATTGACACTCT 70185
| ||||||||||| |||| || ||||||||||| | || || |||| ||| ||
Sbjct 25611 GCCAAGACAGACTATACGGGCCAAGGTGTTGATCAGCTGGCTGA-GGTCATCCACAAACT 25553
Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCA 70245
||||||||| || ||| || | ||| | ||| | | ||||| || || |||||| |
Sbjct 25552 CAAGACCAACCCGTACGATCGGCGTATCATTATGACCGCTTGGAACCCCGCGGATTTGAA 25493
Query 70246 CCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTA---CTCGTAC 70294
| ||||| || |||||||| ||| ||||| || || ||||| |||||||
Sbjct 25492 GAAGATGGCGCTGCCACCGTGCCACATGTTT-GCGCAATTTTATGTCTCGTAC 25441
>seq539
Length=40911
Score = 93.3 bits (102), Expect = 6e-14
Identities = 293/447 (66%), Gaps = 8/447 (2%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| || || || || || || || | ||| | ||| | || || ||||| || ||
Sbjct 17557 CAGGGTGGAAACAAGCGACCTGGAGCCTTTGCCATTTACCTCGAGCCATGGCATGCTGAT 17498
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || || |||| ||||||| ||| || ||||| | || || | |||
Sbjct 17497 GTCTTCGAGTTCCTCGACTTGCGCAAGAACCACGGAAAGGAAGAAGTCCGTGCTCGTGAC 17438
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || | || || ||| | || |||||||||||||| || | | || ||
Sbjct 17437 CTATTCTTGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGTGTTGAGAAAAATGAGGAC 17378
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || ||||||||| | | ||||| || | ||||||| ||||||||||||
Sbjct 17377 TGGACTCTCATGTGCCCCAATGAATGCCCCGGCTTGGCGGATTGCTATGGCGAAGAGTTT 17318
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG--AGTCGATGCAC 97173
||||| ||| |||||| | ||||| || || ||| ||| | || |
Sbjct 17317 GAGGCTCTGTATGAAAAGTACGAGAAGGAGGGTCG--CGGTCGCACGGTTGTCAAGGC-C 17261
Query 97174 GAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTC 97232
|||| |||||| | ||||| || ||| ||| |||||||| | || | ||| ||
Sbjct 17260 CAGAAGCTGTGGTATGCCATTCTGGAGGCCCAGACTGAGACTGGCAACCCTTTCATGCTT 17201
Query 97233 TACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291
||||| || | || || ||||| ||||| || | | || |||||| ||||
Sbjct 17200 TACAAAGA-CCATTGCAACCGCAAGAGCAATCAGAAAAATCTAGGTACCATCCGCAGCTC 17142
Query 97292 CAATCTGTGCACGGAAATTGTAGAGTA 97318
|| |||||||| || ||| | |||||
Sbjct 17141 AAACCTGTGCACTGAGATTATCGAGTA 17115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741046185147800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |