Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq576 143 6e-29 seq1207 111 4e-19 >seq576 Length=37320 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| ||||| || || |||||||| || || | ||||| || || || |||||| Sbjct 12677 GTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCGTCCTCAAGCTGCTTTCCA 12618 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||| ||||| || || || |||||||| ||||| | || Sbjct 12617 GCAAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTG 12558 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| || || ||||| |||||||||||||| || || || || Sbjct 12557 ACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATAGTCTTGCCCGTCAGGGTC 12498 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 12497 TTGACAAAGATTTGCAT 12481 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || |||||||| || || | ||| || || ||||| |||||| Sbjct 12905 GTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGACCATCCTCGAGTTGCTTTCCA 12846 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || |||||||| || || || || ||||| ||||| | || Sbjct 12845 GCAAAGATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 12786 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||| || || ||||| |||||||||||||| || || || || Sbjct 12785 ACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATAGTCTTGCCCGTCAGGGTC 12726 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 12725 TTGACAAAGATTTGCAT 12709 >seq1207 Length=77990 Score = 111 bits (122), Expect = 4e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 |||||||| || |||||||| || || | || || || || || || ||||| || || Sbjct 69257 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 69198 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | ||| || || || || || || || || ||||||||||| | || ||||| || Sbjct 69197 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTAGACTTGACATTGTCG 69138 Query 104492 ACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | || || | ||| || ||||| || ||||| |||||||| ||||| || || || || Sbjct 69137 ATAGTGTC-CGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAA 69079 Query 104551 TATCTGCATTTTG 104563 |||||||| ||| Sbjct 69078 AATCTGCATCTTG 69066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151377673029740