Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq576 104 2e-17 >seq576 Length=37320 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||||||| | |||||||||||| || | ||| || ||| || ||| | Sbjct 12467 CGCAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 12408 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| |||||| |||| || | | |||||||| ||||| ||||| || || Sbjct 12407 TCCTCAAGCTGCTTTCCGGCAAAAATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTA 12348 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | |||||| | ||| || |||| | ||||| || | |||||| Sbjct 12347 TCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGACTCGACTTCGAGGGTGATG 12288 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAA 94997 || || || ||||| || || |||| Sbjct 12287 GTCTTGCCGGTAAGGGTCTTGACAA 12263 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| || | |||||||||||| || | ||| || || | ||| | Sbjct 12695 CGCAGAACCAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCG 12636 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| ||||| ||||||| | | |||||||| ||||| ||||| || || Sbjct 12635 TCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTA 12576 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | |||||| | | | ||| || | ||||| || | || || Sbjct 12575 TCCTGGATCTTGGACTTGACATTGTCAATAGTATCCGAAGACTCGACCTCGAGTGTAATA 12516 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || |||||||| ||||| Sbjct 12515 GTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 12481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448283326885800