Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01- 02] 1,405 sequences; 26,875,327 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq539 156 5e-33 seq431 147 3e-30 >seq539 Length=40911 Score = 156 bits (172), Expect = 5e-33 Identities = 758/1189 (64%), Gaps = 30/1189 (3%) Strand=Plus/Plus Query 62891 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 62950 ||| | |||||| || || || || || ||||| | || | ||| | || ||||| Sbjct 17069 GGCCAGAGATGCTAGGTTGCACACAGCAACCTCGTCAGGGGCACAATACTCGATAATCTC 17128 Query 62951 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010 |||||| || || | ||| || |||| ||||| ||||| ||||| ||| || Sbjct 17129 AGTGCACAGGTTTGAGCTGCGGATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCA 17188 Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070 || || ||||| ||||| || | ||||| ||| |||| | || | ||| || | Sbjct 17189 ATGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGGGCCTCCAGAATGGCATA 17248 Query 63071 CCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGT-- 63127 ||| | | || | ||||| | | | | | | | ||| ||| || | | Sbjct 17249 CCACA-GCTTCTGGGCCTTGACAACCG--TGCGACCGCGACCCTCCTTCTCGTACTTTTC 17305 Query 63128 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 63187 ||||| || ||||| || || | || |||| || || ||||||| || || Sbjct 17306 ATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCA 17365 Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63247 ||| | | ||| || | | | || || || ||||| || | || ||||| || Sbjct 17366 CATGAGAGTCCAGTCCTCATTTTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAG 17425 Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 || | ||||| || | | | ||| || ||||| ||||| | ||||| Sbjct 17426 GGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGCAAGTCGAG 17485 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63367 |||| | | | ||||| |||||| || || | ||| ||||| | ||||||| || || Sbjct 17486 GAACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGTCGCTT 17545 Query 63368 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63427 |||||| ||||| || | || | || ||||| || |||| | | ||| |||| || Sbjct 17546 GTTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGAT 17605 Query 63428 ACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATA--TTACTA 63485 |||||| || |||| || ||||| | || || ||| ||||||||||| | Sbjct 17606 ACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGGAC 17665 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 |||| ||||| || || || ||||| || || || | || || || | || || Sbjct 17666 ATTG--AGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCG 17723 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605 || || ||||| ||||| ||||| |||||| | ||| || || ||||| || Sbjct 17724 TAAATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGAGCC 17783 Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 63665 | || || |||||||| | ||||| || ||||| || || | || || | Sbjct 17784 TGGGGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGGACATA 17843 Query 63666 AGATTGTACGTCTCA---ATAGCTGAGTCTAT---ATCCCATTGATGAATTCCTACTGCG 63719 | ||||| || ||| | | | | || | | |||| ||| || || || Sbjct 17844 AAGTTGTAGGTTTCAAGCACACGTTCGACTTTGTCACCCCA------AATACCCACAGCA 17897 Query 63720 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 63779 |||||||||| ||||||||| || | |||||| ||||| | | ||||| | ||| Sbjct 17898 ACACGCATTATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTAGGTAA 17957 Query 63780 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63839 || || | ||| ||||| ||||| || | ||| ||||| || ||||| | || Sbjct 17958 GAACGCTCAAGAGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATG 18017 Query 63840 ACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT--GAAATAA 63897 | |||| || | |||||| | ||| | | ||| || ||| || || | Sbjct 18018 GCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCAT-ATGTCTCTTTGGAGATCA 18075 Query 63898 TCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCAC 63957 | ||||| ||| | || || |||||||| | | | | || | || ||| || Sbjct 18076 TAGGAGAGGCTTTACGGTTCGCGGGGTTAACATAATGGTAAAGGTCATACACCAC-CGAC 18134 Query 63958 TA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 64016 | || | || || |||| |||||| ||||| || || || || | |||||| || ||| Sbjct 18135 GACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCGGCCAGGATG 18194 Query 64017 GCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64064 |||||||| ||||| |||| | || || ||| || ||||||| ||| Sbjct 18195 GCATAATCGGGATG-TGTGACGGTCATGTAGGCGGCAGTTTCGGCGGCC 18242 Score = 93.3 bits (102), Expect = 5e-14 Identities = 204/305 (67%), Gaps = 3/305 (1%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 |||||||| || || || | || | | |||||| || |||||||| ||||| || ||| Sbjct 16164 GTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGA 16223 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || || |||| ||| ||| ||||| || || | ||| | |||||| || Sbjct 16224 CCTAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGATCTTTCATG 16283 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || || || | ||| || ||| || ||||| || || | ||| |||||||||| | Sbjct 16284 TGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCAGCCATTTGCACA 16343 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 | || || | ||||||||||| || || || | |||||||| | |||| | Sbjct 16344 ACTGTACGCTGGGAAATTTCCCAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATG 16403 Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 | | | |||||||| |||||| || || ||||| | ||||| || | ||| | Sbjct 16404 CTAGGGATGTTCTGAATAGATCCATTGTCCGCAATAATGCGGTTCTTCATATTGTCAGAC 16463 Query 62292 CATAA 62296 ||||| Sbjct 16464 CATAA 16468 >seq431 Length=155802 Score = 147 bits (162), Expect = 3e-30 Identities = 379/571 (66%), Gaps = 16/571 (3%) Strand=Plus/Minus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || || || || ||| |||||| |||||||| | | ||| || ||||| || Sbjct 44199 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAAATGAGCTCGTTTGAG 44140 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || || ||||| || |||||||| ||||| || ||||| ||||| | || Sbjct 44139 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCC 44080 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 33472 || || ||||| || || || ||||||||||||| || | || || ||| | | | Sbjct 44079 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCA-AACGTAGACTC 44021 Query 33473 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 |||| |||||||| ||||||| |||||||| | || || || || || Sbjct 44020 CTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGACGGATGCAGGGAATAGTGTC 43961 Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCA 33586 |||||||| | |||| | | | | | | | || || | || || || || | Sbjct 43960 AATGGCATTGA----ATAGGTATGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATTA 43905 Query 33587 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33646 || ||| |||| ||||| |||||||| || ||||| || |||||||| || | Sbjct 43904 GCAGCGAATAGGTTTCAGAATGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCACC 43845 Query 33647 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTC 33706 ||||||| |||||| || || | || || || | | ||||| || || || | Sbjct 43844 GGGCCTCGGGAATCTGCACCTCGCCTGAGAAGCGCTCAACGAGGTTTTCGTTGACGATGC 43785 Query 33707 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGT 33764 | ||| ||| ||||| || || | | || || || || | ||||| || | Sbjct 43784 CATCAGAGGCAGCAAAGAAGGCGAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCA 43725 Query 33765 TA-GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATG 33823 | | || ||||| || | || ||| || || | ||| | ||||| | ||||| || | Sbjct 43724 GACGGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCTTCAGCAGTCCAGAAGG 43665 Query 33824 ATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 | ||||| ||||| || ||||| | |||||| Sbjct 43664 AAGCCTCGGCCTTCTTGTACATCTGCCAGAT 43634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622936259489800