Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20albifundus_20[genbank_20GCA_5F000813685.1_202015-01-
02] 1,405 sequences; 26,875,327 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq539 156 5e-33
seq431 147 3e-30
>seq539
Length=40911
Score = 156 bits (172), Expect = 5e-33
Identities = 758/1189 (64%), Gaps = 30/1189 (3%)
Strand=Plus/Plus
Query 62891 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 62950
||| | |||||| || || || || || ||||| | || | ||| | || |||||
Sbjct 17069 GGCCAGAGATGCTAGGTTGCACACAGCAACCTCGTCAGGGGCACAATACTCGATAATCTC 17128
Query 62951 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010
|||||| || || | ||| || |||| ||||| ||||| ||||| ||| ||
Sbjct 17129 AGTGCACAGGTTTGAGCTGCGGATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCA 17188
Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070
|| || ||||| ||||| || | ||||| ||| |||| | || | ||| || |
Sbjct 17189 ATGGTCTTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGGGCCTCCAGAATGGCATA 17248
Query 63071 CCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGT-- 63127
||| | | || | ||||| | | | | | | | ||| ||| || | |
Sbjct 17249 CCACA-GCTTCTGGGCCTTGACAACCG--TGCGACCGCGACCCTCCTTCTCGTACTTTTC 17305
Query 63128 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 63187
||||| || ||||| || || | || |||| || || ||||||| || ||
Sbjct 17306 ATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCA 17365
Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63247
||| | | ||| || | | | || || || ||||| || | || ||||| ||
Sbjct 17366 CATGAGAGTCCAGTCCTCATTTTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAG 17425
Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307
|| | ||||| || | | | ||| || ||||| ||||| | |||||
Sbjct 17426 GGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGCAAGTCGAG 17485
Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63367
|||| | | | ||||| |||||| || || | ||| ||||| | ||||||| || ||
Sbjct 17486 GAACTCGAAGACATCAGCATGCCATGGCTCGAGGTAAATGGCAAAGGCTCCAGGTCGCTT 17545
Query 63368 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63427
|||||| ||||| || | || | || ||||| || |||| | | ||| |||| ||
Sbjct 17546 GTTTCCACCCTGGTCAACATAACGGGCAGTGTTGTTGAAAACACGTAGCATGGGAACGAT 17605
Query 63428 ACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATA--TTACTA 63485
|||||| || |||| || ||||| | || || ||| ||||||||||| |
Sbjct 17606 ACCGTTCGAAGTACCGTTAGTACCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGGAC 17665
Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545
|||| ||||| || || || ||||| || || || | || || || | || ||
Sbjct 17666 ATTG--AGACCGATACCGCCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCG 17723
Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605
|| || ||||| ||||| ||||| |||||| | ||| || || ||||| ||
Sbjct 17724 TAAATGCCCTCGATGCTGTCATCTTTCATGTCGACTAGGAAGCACGAAGACAACTGAGCC 17783
Query 63606 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGT 63665
| || || |||||||| | ||||| || ||||| || || | || || |
Sbjct 17784 TGGGGGGTACCAGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTGGACATA 17843
Query 63666 AGATTGTACGTCTCA---ATAGCTGAGTCTAT---ATCCCATTGATGAATTCCTACTGCG 63719
| ||||| || ||| | | | | || | | |||| ||| || || ||
Sbjct 17844 AAGTTGTAGGTTTCAAGCACACGTTCGACTTTGTCACCCCA------AATACCCACAGCA 17897
Query 63720 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 63779
|||||||||| ||||||||| || | |||||| ||||| | | ||||| | |||
Sbjct 17898 ACACGCATTATCATGTGCTGGGGACGTTCAACAATCTTACCATCGAGTTTCAGTAGGTAA 17957
Query 63780 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63839
|| || | ||| ||||| ||||| || | ||| ||||| || ||||| | ||
Sbjct 17958 GAACGCTCAAGAGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGATCGTACACGATG 18017
Query 63840 ACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT--GAAATAA 63897
| |||| || | |||||| | ||| | | ||| || ||| || || |
Sbjct 18018 GCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCAT-ATGTCTCTTTGGAGATCA 18075
Query 63898 TCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCAC 63957
| ||||| ||| | || || |||||||| | | | | || | || ||| ||
Sbjct 18076 TAGGAGAGGCTTTACGGTTCGCGGGGTTAACATAATGGTAAAGGTCATACACCAC-CGAC 18134
Query 63958 TA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 64016
| || | || || |||| |||||| ||||| || || || || | |||||| || |||
Sbjct 18135 GACCATTGCTTCTTGGTTTGCTTGTGGAGATTAGAGACAGCAATACGGGCGGCCAGGATG 18194
Query 64017 GCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64064
|||||||| ||||| |||| | || || ||| || ||||||| |||
Sbjct 18195 GCATAATCGGGATG-TGTGACGGTCATGTAGGCGGCAGTTTCGGCGGCC 18242
Score = 93.3 bits (102), Expect = 5e-14
Identities = 204/305 (67%), Gaps = 3/305 (1%)
Strand=Plus/Plus
Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054
|||||||| || || || | || | | |||||| || |||||||| ||||| || |||
Sbjct 16164 GTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGCAGGTAGTACATGCCCGTCTTGAGA 16223
Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114
|| || |||| ||| ||| ||||| || || | ||| | |||||| ||
Sbjct 16224 CCTAGTTTCCAGCCGGCAAAGTGCATGCTGGTGATCTTGCCCATGGTGGGATCTTTCATG 16283
Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174
|| || || | ||| || ||| || ||||| || || | ||| |||||||||| |
Sbjct 16284 TGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGGTCAGCAGCCATTTGCACA 16343
Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234
| || || | ||||||||||| || || || | |||||||| | |||| |
Sbjct 16344 ACTGTACGCTGGGAAATTTCCCAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATG 16403
Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291
| | | |||||||| |||||| || || ||||| | ||||| || | ||| |
Sbjct 16404 CTAGGGATGTTCTGAATAGATCCATTGTCCGCAATAATGCGGTTCTTCATATTGTCAGAC 16463
Query 62292 CATAA 62296
|||||
Sbjct 16464 CATAA 16468
>seq431
Length=155802
Score = 147 bits (162), Expect = 3e-30
Identities = 379/571 (66%), Gaps = 16/571 (3%)
Strand=Plus/Minus
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||| || || || || ||| |||||| |||||||| | | ||| || ||||| ||
Sbjct 44199 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCGTCACGAGAAATGAGCTCGTTTGAG 44140
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| || || || ||||| || |||||||| ||||| || ||||| ||||| | ||
Sbjct 44139 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCACCC 44080
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 33472
|| || ||||| || || || ||||||||||||| || | || || ||| | | |
Sbjct 44079 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCA-AACGTAGACTC 44021
Query 33473 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530
|||| |||||||| ||||||| |||||||| | || || || || ||
Sbjct 44020 CTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGACGGATGCAGGGAATAGTGTC 43961
Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCA 33586
|||||||| | |||| | | | | | | | || || | || || || || |
Sbjct 43960 AATGGCATTGA----ATAGGTATGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATTA 43905
Query 33587 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33646
|| ||| |||| ||||| |||||||| || ||||| || |||||||| || |
Sbjct 43904 GCAGCGAATAGGTTTCAGAATGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCACC 43845
Query 33647 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTC 33706
||||||| |||||| || || | || || || | | ||||| || || || |
Sbjct 43844 GGGCCTCGGGAATCTGCACCTCGCCTGAGAAGCGCTCAACGAGGTTTTCGTTGACGATGC 43785
Query 33707 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGTGT 33764
| ||| ||| ||||| || || | | || || || || | ||||| || |
Sbjct 43784 CATCAGAGGCAGCAAAGAAGGCGAGAATGTGGGAGATGAAGTACTGCTCGTCCTTGTTCA 43725
Query 33765 TA-GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATG 33823
| | || ||||| || | || ||| || || | ||| | ||||| | ||||| || |
Sbjct 43724 GACGGTTGTTCCAGTCGTGGAGATCCTTGGAGAGATCAATCTCTTCAGCAGTCCAGAAGG 43665
Query 33824 ATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854
| ||||| ||||| || ||||| | ||||||
Sbjct 43664 AAGCCTCGGCCTTCTTGTACATCTGCCAGAT 43634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622936259489800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |